Wall clock time and date at job start Sun Mar 29 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48497 * 109.47313 * 270.00194 * 3 2 1 5 5 H 1.48502 * 109.47408 * 30.00603 * 3 2 1 6 6 H 1.48499 * 109.46773 * 150.00249 * 3 2 1 7 7 C 1.37880 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99641 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46978 * 178.20278 * 9 7 2 11 11 C 1.46843 * 111.00080 * 59.85526 * 10 9 7 12 12 C 1.53038 * 109.52620 * 174.15967 * 11 10 9 13 13 C 1.53115 * 109.27497 * 59.18389 * 12 11 10 14 14 C 1.53098 * 109.15545 * 302.34406 * 13 12 11 15 15 C 1.46853 * 111.00134 * 295.64731 * 10 9 7 16 16 H 1.08996 * 109.46138 * 65.82076 * 15 10 9 17 17 C 1.52997 * 109.46052 * 305.84624 * 15 10 9 18 18 C 1.53005 * 109.46916 * 301.93523 * 17 15 10 19 19 O 1.42899 * 109.46961 * 174.83907 * 18 17 15 20 20 H 0.96997 * 120.00466 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47311 * 58.20667 * 9 7 2 22 22 H 1.08996 * 109.47739 * 298.20503 * 9 7 2 23 23 H 1.08996 * 109.46792 * 294.17851 * 11 10 9 24 24 H 1.09002 * 109.45975 * 54.14748 * 11 10 9 25 25 H 1.09003 * 109.50505 * 179.12586 * 12 11 10 26 26 H 1.09002 * 109.50140 * 299.20253 * 12 11 10 27 27 H 1.08999 * 109.52782 * 62.24886 * 13 12 11 28 28 H 1.09003 * 109.52458 * 182.44285 * 13 12 11 29 29 H 1.09001 * 109.50506 * 297.71474 * 14 13 12 30 30 H 1.09004 * 109.48995 * 177.60474 * 14 13 12 31 31 H 1.08995 * 109.47270 * 61.93886 * 17 15 10 32 32 H 1.09002 * 109.46861 * 181.94318 * 17 15 10 33 33 H 1.08991 * 109.47220 * 294.83754 * 18 17 15 34 34 H 1.08993 * 109.46786 * 54.84410 * 18 17 15 35 35 H 0.96704 * 114.00430 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2051 -3.6153 -0.0446 11 6 3.1027 -3.5866 1.1172 12 6 3.9824 -4.8388 1.1150 13 6 4.7963 -4.8825 -0.1812 14 6 3.8394 -4.8628 -1.3761 15 6 2.9638 -3.6099 -1.3019 16 1 3.5955 -2.7225 -1.3411 17 6 1.9920 -3.5963 -2.4836 18 6 1.0726 -4.8165 -2.4018 19 8 0.0883 -4.7414 -3.4350 20 1 -0.4851 0.8400 0.0004 21 1 0.6002 -2.5429 -0.8738 22 1 0.6491 -2.5712 0.9053 23 1 3.7338 -2.6994 1.0668 24 1 2.5113 -3.5599 2.0324 25 1 4.6592 -4.8096 1.9690 26 1 3.3525 -5.7261 1.1801 27 1 5.4547 -4.0151 -0.2274 28 1 5.3920 -5.7950 -0.2067 29 1 3.2073 -5.7504 -1.3509 30 1 4.4142 -4.8508 -2.3022 31 1 1.3925 -2.6866 -2.4505 32 1 2.5544 -3.6271 -3.4168 33 1 1.6621 -5.7246 -2.5269 34 1 0.5787 -4.8347 -1.4303 35 1 -0.5308 -5.4842 -3.4433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019475602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:28 Heat of formation + Delta-G solvation = -64.604706 kcal Electronic energy + Delta-G solvation = -15284.333789 eV Core-core repulsion = 12895.500731 eV Total energy + Delta-G solvation = -2388.833058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82666 -36.21527 -33.64897 -32.37322 -31.60502 -27.77472 -26.57744 -23.98183 -23.14301 -21.38123 -20.36380 -18.49632 -16.93045 -16.17832 -15.18961 -14.97635 -14.22900 -14.22063 -13.71492 -13.59592 -12.91412 -12.56041 -12.44256 -11.70032 -11.50858 -11.11458 -11.06412 -10.94711 -10.88331 -10.47230 -10.39514 -10.17355 -9.97784 -9.74780 -9.67515 -9.30698 -9.17619 -8.38285 -7.12539 -5.99590 -4.08622 3.28535 3.35504 3.37788 4.42547 4.77501 4.97370 5.30381 5.31780 5.38304 5.41453 5.67471 5.81908 5.93649 6.02123 6.09558 6.15106 6.19679 6.36601 6.38919 6.44746 6.54069 6.67077 6.76791 6.78632 6.94226 7.03437 7.34105 7.58102 7.94159 8.09673 8.12330 8.32626 8.36427 9.01888 9.58001 11.05161 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.011616 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.969001 B = 2409.863147 C = 3098.091563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.181 3.819 10 N -0.536 5.536 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.115 4.115 15 C 0.097 3.903 16 H 0.048 0.952 17 C -0.110 4.110 18 C 0.083 3.917 19 O -0.581 6.581 20 H 0.262 0.738 21 H 0.042 0.958 22 H 0.027 0.973 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -9.840 -1.677 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.073 0.927 9 C 0.056 3.944 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.012 4.012 16 H 0.066 0.934 17 C -0.148 4.148 18 C 0.006 3.994 19 O -0.386 6.386 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.375 -9.596 -1.779 11.142 hybrid contribution 0.664 1.339 0.166 1.504 sum 6.039 -8.257 -1.613 10.356 Atomic orbital electron populations 1.69939 1.05954 1.26746 1.50171 1.24948 0.94731 0.99025 0.95012 0.86688 0.79902 0.83858 0.78130 1.20649 1.21176 1.20054 1.21733 0.93237 0.92142 1.51562 0.92652 1.19852 0.91039 0.85436 0.98096 1.62473 1.16965 1.46484 1.00198 1.21841 0.94691 0.95425 0.94543 1.21632 0.97931 0.99438 0.96497 1.21535 0.97668 1.00674 0.95646 1.21729 0.97361 0.99112 0.97105 1.21303 0.93619 0.95934 0.90388 0.93381 1.21527 0.97215 0.99207 0.96860 1.22241 0.89527 0.97325 0.90356 1.86488 1.46296 1.50150 1.55651 0.92855 0.94038 0.95532 0.94471 0.91818 0.92755 0.91994 0.92618 0.92915 0.91715 0.92639 0.89476 0.92691 0.94873 0.91910 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.55 -14.99 7.73 -34.44 -0.27 -15.25 16 8 H 0.06 1.51 5.84 -52.49 -0.31 1.21 16 9 C 0.18 4.61 4.48 -4.98 -0.02 4.59 16 10 N -0.54 -11.21 3.80 -228.13 -0.87 -12.08 16 11 C 0.06 1.23 5.04 -3.84 -0.02 1.21 16 12 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 13 C -0.12 -1.71 6.00 -26.62 -0.16 -1.87 16 14 C -0.12 -1.79 5.08 -26.66 -0.14 -1.93 16 15 C 0.10 1.86 1.78 -67.72 -0.12 1.74 16 16 H 0.05 1.04 6.96 -51.93 -0.36 0.68 16 17 C -0.11 -2.14 4.79 -26.73 -0.13 -2.27 16 18 C 0.08 1.43 6.34 37.16 0.24 1.67 16 19 O -0.58 -9.93 13.66 -35.23 -0.48 -10.41 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.04 1.14 5.77 -51.93 -0.30 0.84 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.79 6.63 -51.93 -0.34 0.44 16 24 H 0.06 1.26 8.12 -51.93 -0.42 0.83 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.98 6.56 -51.93 -0.34 0.64 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 2.02 6.35 -51.93 -0.33 1.69 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.03 0.50 6.73 -51.93 -0.35 0.15 16 34 H 0.06 1.17 7.08 -51.93 -0.37 0.81 16 35 H 0.37 4.34 9.12 45.56 0.42 4.75 16 LS Contribution 268.87 15.07 4.05 4.05 Total: -1.00 -29.88 268.87 -7.26 -37.14 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.80 Total: 2.59 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.88 Total: -12.33 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.13 Total: -37.65 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.48 Total: -10.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.88 -7.26 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019475602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.464 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds