Wall clock time and date at job start Sun Mar 29 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48497 * 109.47313 * 270.00194 * 3 2 1 5 5 H 1.48502 * 109.47408 * 30.00603 * 3 2 1 6 6 H 1.48499 * 109.46773 * 150.00249 * 3 2 1 7 7 C 1.37880 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99641 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46978 * 178.20278 * 9 7 2 11 11 C 1.46843 * 111.00080 * 59.85526 * 10 9 7 12 12 C 1.53038 * 109.52620 * 174.15967 * 11 10 9 13 13 C 1.53115 * 109.27497 * 59.18389 * 12 11 10 14 14 C 1.53098 * 109.15545 * 302.34406 * 13 12 11 15 15 C 1.46853 * 111.00134 * 295.64731 * 10 9 7 16 16 H 1.08996 * 109.46138 * 65.82076 * 15 10 9 17 17 C 1.52997 * 109.46052 * 305.84624 * 15 10 9 18 18 C 1.53005 * 109.46916 * 301.93523 * 17 15 10 19 19 O 1.42899 * 109.46961 * 174.83907 * 18 17 15 20 20 H 0.96997 * 120.00466 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47311 * 58.20667 * 9 7 2 22 22 H 1.08996 * 109.47739 * 298.20503 * 9 7 2 23 23 H 1.08996 * 109.46792 * 294.17851 * 11 10 9 24 24 H 1.09002 * 109.45975 * 54.14748 * 11 10 9 25 25 H 1.09003 * 109.50505 * 179.12586 * 12 11 10 26 26 H 1.09002 * 109.50140 * 299.20253 * 12 11 10 27 27 H 1.08999 * 109.52782 * 62.24886 * 13 12 11 28 28 H 1.09003 * 109.52458 * 182.44285 * 13 12 11 29 29 H 1.09001 * 109.50506 * 297.71474 * 14 13 12 30 30 H 1.09004 * 109.48995 * 177.60474 * 14 13 12 31 31 H 1.08995 * 109.47270 * 61.93886 * 17 15 10 32 32 H 1.09002 * 109.46861 * 181.94318 * 17 15 10 33 33 H 1.08991 * 109.47220 * 294.83754 * 18 17 15 34 34 H 1.08993 * 109.46786 * 54.84410 * 18 17 15 35 35 H 0.96704 * 114.00430 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2051 -3.6153 -0.0446 11 6 3.1027 -3.5866 1.1172 12 6 3.9824 -4.8388 1.1150 13 6 4.7963 -4.8825 -0.1812 14 6 3.8394 -4.8628 -1.3761 15 6 2.9638 -3.6099 -1.3019 16 1 3.5955 -2.7225 -1.3411 17 6 1.9920 -3.5963 -2.4836 18 6 1.0726 -4.8165 -2.4018 19 8 0.0883 -4.7414 -3.4350 20 1 -0.4851 0.8400 0.0004 21 1 0.6002 -2.5429 -0.8738 22 1 0.6491 -2.5712 0.9053 23 1 3.7338 -2.6994 1.0668 24 1 2.5113 -3.5599 2.0324 25 1 4.6592 -4.8096 1.9690 26 1 3.3525 -5.7261 1.1801 27 1 5.4547 -4.0151 -0.2274 28 1 5.3920 -5.7950 -0.2067 29 1 3.2073 -5.7504 -1.3509 30 1 4.4142 -4.8508 -2.3022 31 1 1.3925 -2.6866 -2.4505 32 1 2.5544 -3.6271 -3.4168 33 1 1.6621 -5.7246 -2.5269 34 1 0.5787 -4.8347 -1.4303 35 1 -0.5308 -5.4842 -3.4433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019475602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:28 Heat of formation + Delta-G solvation = -86.655505 kcal Electronic energy + Delta-G solvation = -15285.289984 eV Core-core repulsion = 12895.500731 eV Total energy + Delta-G solvation = -2389.789252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37858 -37.58796 -35.46747 -33.95280 -33.37844 -29.25394 -28.49456 -25.76524 -24.60136 -23.11355 -21.75176 -20.13504 -18.39632 -18.13080 -16.91669 -16.64379 -15.93522 -15.67502 -15.23831 -14.96703 -14.55258 -14.29447 -13.90962 -13.35845 -13.11620 -12.90191 -12.82383 -12.57528 -12.33389 -12.28812 -12.12788 -11.84394 -11.62463 -11.39270 -11.15342 -10.83866 -10.64433 -10.55548 -8.96742 -8.14450 -6.34380 1.33456 1.33836 1.44071 2.35396 3.09331 3.34873 3.49776 3.98076 4.07185 4.12551 4.34256 4.38800 4.54496 4.61781 4.67427 4.79720 4.88099 4.99576 5.06184 5.12722 5.17037 5.20474 5.27967 5.32951 5.37193 5.43217 5.46403 5.58375 5.78392 6.09446 6.30997 6.63027 6.88100 7.01119 7.36771 8.86852 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.011616 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.969001 B = 2409.863147 C = 3098.091563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.052 0.948 9 C 0.197 3.803 10 N -0.529 5.529 11 C 0.060 3.940 12 C -0.108 4.108 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.097 3.903 16 H 0.018 0.982 17 C -0.110 4.110 18 C 0.093 3.907 19 O -0.600 6.600 20 H 0.264 0.736 21 H 0.017 0.983 22 H -0.004 1.004 23 H 0.013 0.987 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -11.306 -2.019 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.253 5.253 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.012 4.012 16 H 0.036 0.964 17 C -0.148 4.148 18 C 0.015 3.985 19 O -0.408 6.408 20 H 0.073 0.927 21 H 0.035 0.965 22 H 0.014 0.986 23 H 0.031 0.969 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.283 -11.091 -2.121 13.437 hybrid contribution 0.035 1.763 0.255 1.782 sum 7.318 -9.328 -1.866 12.002 Atomic orbital electron populations 1.70064 1.07502 1.27705 1.51273 1.25795 0.95583 1.02724 0.94727 0.85632 0.78760 0.79462 0.78319 1.20094 1.20539 1.19252 1.21971 0.93168 0.93179 1.50855 0.92938 1.19454 0.91489 0.86717 0.95277 1.62434 1.17278 1.43776 1.01844 1.21932 0.94450 0.97091 0.93326 1.21581 0.97690 0.97009 0.98258 1.21558 0.97382 1.02171 0.94215 1.21700 0.97148 0.96830 0.98863 1.21376 0.93448 0.97194 0.89189 0.96356 1.21479 0.97357 0.98120 0.97797 1.22070 0.89470 0.97381 0.89534 1.86429 1.47025 1.52068 1.55299 0.92722 0.96496 0.98633 0.96853 0.93019 0.90526 0.90962 0.93275 0.89367 0.90433 0.90477 0.94480 0.91032 0.91428 0.93889 0.75800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 2 C 0.01 0.63 5.46 84.66 0.46 1.09 16 3 Si 0.95 45.13 29.54 68.60 2.03 47.16 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -31.37 7.73 25.60 0.20 -31.17 16 8 H 0.05 2.96 5.84 -2.91 -0.02 2.94 16 9 C 0.20 10.56 4.48 85.56 0.38 10.94 16 10 N -0.53 -22.49 3.80 -875.68 -3.32 -25.81 16 11 C 0.06 2.34 5.04 86.33 0.43 2.78 16 12 C -0.11 -3.01 6.09 30.65 0.19 -2.83 16 13 C -0.12 -2.93 6.00 30.67 0.18 -2.75 16 14 C -0.11 -3.00 5.08 30.64 0.16 -2.84 16 15 C 0.10 3.69 1.78 44.93 0.08 3.77 16 16 H 0.02 0.81 6.96 -2.39 -0.02 0.79 16 17 C -0.11 -4.27 4.79 30.59 0.15 -4.12 16 18 C 0.09 3.11 6.34 71.98 0.46 3.56 16 19 O -0.60 -19.90 13.66 -148.98 -2.03 -21.93 16 20 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 21 H 0.02 0.99 5.77 -2.38 -0.01 0.98 16 22 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 23 H 0.01 0.57 6.63 -2.39 -0.02 0.56 16 24 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.00 6.56 -2.39 -0.02 1.98 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.04 1.80 6.35 -2.39 -0.02 1.78 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 1.82 6.73 -2.39 -0.02 1.81 16 34 H 0.04 1.60 7.08 -2.39 -0.02 1.59 16 35 H 0.39 8.57 9.12 -74.05 -0.68 7.90 16 Total: -1.00 -66.71 268.87 0.03 -66.68 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.39 Total: 11.75 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 2.69 Total: -21.56 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -3.04 Total: -82.09 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -2.03 Total: -21.93 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -66.71 0.03 -66.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019475602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.980 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds