Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99956 * 2 1 4 4 C 1.50696 * 109.46871 * 89.99486 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34771 * 120.00412 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00196 * 180.02562 * 12 2 1 14 14 C 1.50709 * 120.00019 * 359.97438 * 12 2 1 15 15 H 1.09000 * 109.86973 * 304.30243 * 14 12 2 16 16 C 1.54098 * 109.87461 * 65.30803 * 14 12 2 17 17 C 1.54810 * 104.18695 * 121.45673 * 16 14 12 18 18 C 1.54988 * 102.09221 * 20.87591 * 17 16 14 19 19 O 1.43740 * 109.88145 * 183.29369 * 14 12 2 20 20 H 1.09004 * 109.47037 * 90.00282 * 1 2 3 21 21 H 1.09005 * 109.46844 * 209.99839 * 1 2 3 22 22 H 1.08991 * 109.47404 * 329.99908 * 1 2 3 23 23 H 1.09005 * 109.46943 * 329.99807 * 3 2 1 24 24 H 1.09002 * 109.47064 * 210.00069 * 3 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.49240 * 240.13227 * 16 14 12 27 27 H 1.08998 * 110.49063 * 2.77799 * 16 14 12 28 28 H 1.09004 * 110.90851 * 139.08135 * 17 16 14 29 29 H 1.09005 * 110.90443 * 262.68253 * 17 16 14 30 30 H 1.09005 * 110.61684 * 81.48240 * 18 17 16 31 31 H 1.09005 * 110.62323 * 204.31361 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 1.4208 5 1 2.0979 1.0959 2.2417 6 6 3.1259 2.8781 1.6727 7 7 3.3454 3.2576 2.9127 8 14 3.7316 3.9300 0.2529 9 1 5.1050 3.5094 -0.1241 10 1 2.8250 3.7602 -0.9109 11 1 3.7464 5.3566 0.6649 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7003 -2.5046 0.8466 16 6 0.5988 -2.6231 -1.3169 17 6 1.1405 -3.9352 -1.9345 18 6 1.7434 -4.6509 -0.6991 19 8 2.3099 -3.5704 0.0765 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6084 2.0284 -0.5139 24 1 3.1499 1.1385 -0.5139 25 1 3.8222 4.0835 3.0899 26 1 -0.4691 -2.7086 -1.1157 27 1 0.7968 -1.7798 -1.9785 28 1 0.3321 -4.5235 -2.3689 29 1 1.9105 -3.7266 -2.6774 30 1 0.9640 -5.1601 -0.1321 31 1 2.5174 -5.3556 -1.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = -74.643881 kcal Electronic energy + Delta-G solvation = -14635.858121 eV Core-core repulsion = 12110.756637 eV Total energy + Delta-G solvation = -2525.101484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.98986 -37.90050 -34.92933 -32.65774 -31.98031 -30.00252 -27.98345 -25.97931 -23.72617 -21.93944 -21.51182 -18.74823 -17.04230 -16.78718 -16.22912 -15.91558 -14.78361 -14.67085 -14.25828 -13.71007 -13.51038 -12.96125 -12.51774 -12.35845 -12.05955 -11.73251 -11.52826 -11.47415 -11.22225 -10.94979 -10.88316 -10.51324 -10.14782 -9.88764 -9.51404 -8.78542 -8.57375 -7.70828 -6.07042 -4.05918 3.25662 3.30338 3.36135 3.38074 3.55608 4.18103 4.40979 4.50897 4.76930 4.83856 5.03784 5.16744 5.25754 5.40890 5.55022 5.60161 5.65037 5.67611 5.81747 5.87229 5.97917 6.15296 6.64024 6.86138 6.97213 7.34418 7.62151 8.22514 8.48535 8.94567 9.00184 9.52879 11.06432 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053604 B = 0.007836 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.223854 B = 3572.178095 C = 3648.884504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.217 3.783 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.285 1.285 12 C 0.506 3.494 13 O -0.521 6.521 14 C 0.060 3.940 15 H 0.090 0.910 16 C -0.144 4.144 17 C -0.154 4.154 18 C 0.043 3.957 19 O -0.347 6.347 20 H 0.046 0.954 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.031 0.969 24 H 0.037 0.963 25 H 0.265 0.735 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -11.649 -9.876 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.331 5.331 3 C 0.096 3.904 4 C -0.569 4.569 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.210 1.210 12 C 0.291 3.709 13 O -0.396 6.396 14 C -0.001 4.001 15 H 0.107 0.893 16 C -0.182 4.182 17 C -0.191 4.191 18 C -0.034 4.034 19 O -0.265 6.265 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.096 0.904 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.467 -11.484 -9.645 17.222 hybrid contribution 0.027 0.671 -0.582 0.889 sum -8.440 -10.813 -10.228 17.110 Atomic orbital electron populations 1.21739 0.81001 1.03046 1.00448 1.47781 1.06233 1.06791 1.72292 1.19675 0.92474 0.79805 0.98429 1.21348 1.37096 1.07131 0.91297 0.90726 1.24868 0.95204 0.97362 0.95619 1.69902 1.41441 1.23567 1.18658 0.86837 0.80165 0.79716 0.82882 1.19874 1.19074 1.21032 1.20154 0.88188 0.84626 0.77884 1.90684 1.13695 1.86803 1.48410 1.22682 0.91011 0.87782 0.98643 0.89260 1.22956 1.00155 0.99097 0.96014 1.23139 1.01167 0.96103 0.98741 1.23623 0.98214 0.90750 0.90829 1.89080 1.43719 1.22048 1.71630 0.93517 0.92256 0.90402 0.95076 0.94550 0.92551 0.89793 0.89887 0.90050 0.90324 0.92141 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.21 59.85 0.55 1.79 16 2 N -0.60 -12.62 2.86 -182.95 -0.52 -13.14 16 3 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 4 C -0.53 -15.62 9.94 -34.44 -0.34 -15.96 16 5 H 0.07 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 8 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.51 11.07 6.86 -10.98 -0.08 10.99 16 13 O -0.52 -14.06 16.11 -14.01 -0.23 -14.29 16 14 C 0.06 0.98 2.97 -27.31 -0.08 0.90 16 15 H 0.09 1.30 7.19 -51.93 -0.37 0.93 16 16 C -0.14 -1.69 5.23 -25.20 -0.13 -1.82 16 17 C -0.15 -1.57 7.16 -24.73 -0.18 -1.75 16 18 C 0.04 0.50 7.72 38.21 0.29 0.79 16 19 O -0.35 -6.12 10.75 -54.80 -0.59 -6.71 16 20 H 0.05 0.57 7.86 -51.93 -0.41 0.16 16 21 H 0.06 0.74 6.19 -51.93 -0.32 0.42 16 22 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 23 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 24 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.04 7.34 -51.93 -0.38 0.66 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 258.39 15.07 3.89 3.89 Total: -1.00 -36.18 258.39 -5.75 -41.93 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.33 Total: -3.93 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.08 Total: 2.38 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.25 Total: -40.49 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.81 Total: -21.00 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -36.18 -5.75 -41.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.712 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds