Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99956 * 2 1 4 4 C 1.50696 * 109.46871 * 89.99486 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34771 * 120.00412 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00196 * 180.02562 * 12 2 1 14 14 C 1.50709 * 120.00019 * 359.97438 * 12 2 1 15 15 H 1.09000 * 109.86973 * 304.30243 * 14 12 2 16 16 C 1.54098 * 109.87461 * 65.30803 * 14 12 2 17 17 C 1.54810 * 104.18695 * 121.45673 * 16 14 12 18 18 C 1.54988 * 102.09221 * 20.87591 * 17 16 14 19 19 O 1.43740 * 109.88145 * 183.29369 * 14 12 2 20 20 H 1.09004 * 109.47037 * 90.00282 * 1 2 3 21 21 H 1.09005 * 109.46844 * 209.99839 * 1 2 3 22 22 H 1.08991 * 109.47404 * 329.99908 * 1 2 3 23 23 H 1.09005 * 109.46943 * 329.99807 * 3 2 1 24 24 H 1.09002 * 109.47064 * 210.00069 * 3 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.49240 * 240.13227 * 16 14 12 27 27 H 1.08998 * 110.49063 * 2.77799 * 16 14 12 28 28 H 1.09004 * 110.90851 * 139.08135 * 17 16 14 29 29 H 1.09005 * 110.90443 * 262.68253 * 17 16 14 30 30 H 1.09005 * 110.61684 * 81.48240 * 18 17 16 31 31 H 1.09005 * 110.62323 * 204.31361 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7038 1.4208 5 1 2.0979 1.0959 2.2417 6 6 3.1259 2.8781 1.6727 7 7 3.3454 3.2576 2.9127 8 14 3.7316 3.9300 0.2529 9 1 5.1050 3.5094 -0.1241 10 1 2.8250 3.7602 -0.9109 11 1 3.7464 5.3566 0.6649 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7003 -2.5046 0.8466 16 6 0.5988 -2.6231 -1.3169 17 6 1.1405 -3.9352 -1.9345 18 6 1.7434 -4.6509 -0.6991 19 8 2.3099 -3.5704 0.0765 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6084 2.0284 -0.5139 24 1 3.1499 1.1385 -0.5139 25 1 3.8222 4.0835 3.0899 26 1 -0.4691 -2.7086 -1.1157 27 1 0.7968 -1.7798 -1.9785 28 1 0.3321 -4.5235 -2.3689 29 1 1.9105 -3.7266 -2.6774 30 1 0.9640 -5.1601 -0.1321 31 1 2.5174 -5.3556 -1.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = -101.857442 kcal Electronic energy + Delta-G solvation = -14637.038189 eV Core-core repulsion = 12110.756637 eV Total energy + Delta-G solvation = -2526.281552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35555 -39.31824 -36.69895 -34.78384 -33.09990 -31.46096 -29.61253 -27.44018 -25.25232 -23.48539 -22.51338 -20.30880 -19.17767 -18.24735 -17.55868 -17.24835 -16.46118 -16.23561 -15.63651 -15.20919 -14.65881 -14.54589 -14.25462 -13.87171 -13.69086 -13.28070 -12.86483 -12.64349 -12.57609 -12.46570 -12.11585 -12.04638 -11.82194 -11.75620 -11.06266 -10.85703 -10.36658 -9.45107 -8.36514 -6.42407 1.30732 1.36052 1.44215 1.66951 2.09870 2.29406 2.97560 3.05797 3.47227 3.67388 3.85174 4.07010 4.27706 4.38690 4.47382 4.63886 4.72526 4.76641 4.82200 4.89160 4.91571 4.96441 5.05113 5.18059 5.42953 5.55193 5.85637 6.21376 6.58842 6.62841 7.17803 7.35902 8.80717 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053604 B = 0.007836 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.223854 B = 3572.178095 C = 3648.884504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.223 3.777 4 C -0.542 4.542 5 H 0.026 0.974 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.234 1.234 11 H -0.272 1.272 12 C 0.491 3.509 13 O -0.591 6.591 14 C 0.065 3.935 15 H 0.109 0.891 16 C -0.137 4.137 17 C -0.147 4.147 18 C 0.033 3.967 19 O -0.395 6.395 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.015 0.985 25 H 0.269 0.731 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -12.304 -12.272 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C 0.101 3.899 4 C -0.580 4.580 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.157 1.157 11 H -0.197 1.197 12 C 0.279 3.721 13 O -0.471 6.471 14 C 0.004 3.996 15 H 0.127 0.873 16 C -0.175 4.175 17 C -0.184 4.184 18 C -0.043 4.043 19 O -0.314 6.314 20 H 0.106 0.894 21 H 0.107 0.893 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.857 -12.161 -12.054 20.275 hybrid contribution 0.726 0.782 0.261 1.099 sum -10.131 -11.379 -11.794 19.266 Atomic orbital electron populations 1.22122 0.77149 1.04174 1.03431 1.47901 1.08693 1.05427 1.71435 1.19367 0.92778 0.82430 0.95321 1.21590 1.37188 1.06807 0.92447 0.95548 1.25914 0.95148 0.98985 0.98842 1.70057 1.42578 1.24527 1.21383 0.85674 0.79504 0.77737 0.79778 1.20446 1.15701 1.19651 1.21380 0.87897 0.86692 0.76132 1.90631 1.16856 1.88004 1.51622 1.22759 0.90317 0.84369 1.02115 0.87318 1.23038 1.01816 0.99517 0.93115 1.23156 1.01947 0.95602 0.97701 1.23977 0.99295 0.89669 0.91337 1.89039 1.45598 1.23723 1.73037 0.89388 0.89287 0.91269 0.92418 0.96685 0.92172 0.85455 0.90713 0.86027 0.91640 0.89429 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 9.21 127.77 1.18 3.18 16 2 N -0.60 -25.14 2.86 -851.11 -2.43 -27.57 16 3 C 0.22 11.20 4.23 85.63 0.36 11.57 16 4 C -0.54 -32.99 9.94 25.60 0.25 -32.73 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.55 5.47 84.66 0.46 1.01 16 7 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 8 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 9 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.23 -9.86 6.54 99.48 0.65 -9.21 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.49 21.68 6.86 87.66 0.60 22.28 16 13 O -0.59 -33.41 16.11 15.67 0.25 -33.15 16 14 C 0.07 2.02 2.97 30.22 0.09 2.11 16 15 H 0.11 2.89 7.19 -2.39 -0.02 2.87 16 16 C -0.14 -2.67 5.23 31.58 0.17 -2.51 16 17 C -0.15 -2.45 7.16 31.89 0.23 -2.22 16 18 C 0.03 0.68 7.72 72.66 0.56 1.24 16 19 O -0.39 -13.73 10.75 -130.27 -1.40 -15.13 16 20 H 0.09 1.74 7.86 -2.38 -0.02 1.72 16 21 H 0.09 1.90 6.19 -2.38 -0.01 1.89 16 22 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 23 H 0.06 2.58 7.13 -2.38 -0.02 2.56 16 24 H 0.02 0.82 6.85 -2.39 -0.02 0.80 16 25 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 26 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.61 7.34 -2.39 -0.02 1.60 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -85.28 258.39 3.56 -81.72 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.05 Total: 3.90 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 3.90 Total: 3.92 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -2.13 Total: -88.42 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -1.15 Total: -48.29 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -85.28 3.56 -81.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.136 kcal (2) G-P(sol) polarization free energy of solvation -85.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds