Wall clock time and date at job start Sun Mar 29 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 O 1.42906 * 109.46869 * 294.71337 * 15 14 13 17 17 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 18 18 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 23 23 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 24 24 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 25 25 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 26 26 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 27 27 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 28 28 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 29 29 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 30 30 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 31 31 H 0.96694 * 113.99788 * 180.02562 * 16 15 14 32 32 H 1.09005 * 109.50073 * 297.71107 * 17 14 13 33 33 H 1.08991 * 109.50379 * 177.59621 * 17 14 13 34 34 H 1.08989 * 109.46428 * 305.85572 * 18 11 10 35 35 H 1.09002 * 109.45912 * 65.83533 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 8 -0.7282 -9.1148 1.9835 17 6 1.6025 -7.3529 -0.3779 18 6 2.4172 -6.0650 -0.2392 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6042 -0.8905 23 1 2.8721 -3.6043 0.8895 24 1 1.4582 -5.2089 2.0805 25 1 0.1214 -4.2418 1.4133 26 1 -0.8110 -6.2639 0.3319 27 1 -0.6487 -6.5069 2.0884 28 1 1.4778 -7.7099 1.7446 29 1 -0.8077 -8.6728 -0.0332 30 1 0.5677 -9.6810 0.4771 31 1 -1.2933 -9.8991 1.9584 32 1 0.9220 -7.2637 -1.2248 33 1 2.2764 -8.1942 -0.5390 34 1 2.9813 -5.8916 -1.1555 35 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034959112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:14 Heat of formation + Delta-G solvation = -93.651262 kcal Electronic energy + Delta-G solvation = -14464.796601 eV Core-core repulsion = 12074.703990 eV Total energy + Delta-G solvation = -2390.092611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22917 -37.79282 -35.77778 -34.39644 -31.84746 -31.30605 -27.98618 -25.79452 -24.27785 -23.04429 -21.75825 -20.65306 -18.62041 -18.12915 -16.67227 -16.55589 -16.21665 -15.85537 -15.29719 -15.12399 -14.56883 -14.25330 -14.10054 -13.86183 -13.14692 -13.05776 -13.00037 -12.74016 -12.42980 -12.13334 -11.94735 -11.64062 -11.54639 -11.40874 -11.19949 -11.04062 -10.75867 -10.52438 -9.17535 -8.20056 -6.32027 1.39836 1.43530 1.51482 2.40331 3.08276 3.13030 3.36173 3.80483 3.86335 4.13016 4.28890 4.34216 4.46305 4.47343 4.57583 4.64791 4.67136 4.74062 4.87990 4.94718 4.96075 5.05482 5.12176 5.20326 5.25644 5.43639 5.48669 5.66548 5.78549 6.10794 6.33432 6.36085 6.84910 6.98122 7.37134 8.92109 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.065576 B = 0.005615 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.881278 B = 4985.145731 C = 5259.634273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.078 3.922 11 N -0.550 5.550 12 C 0.056 3.944 13 C -0.097 4.097 14 C -0.088 4.088 15 C 0.086 3.914 16 O -0.595 6.595 17 C -0.100 4.100 18 C 0.052 3.948 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.008 1.008 22 H 0.066 0.934 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -17.887 0.513 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.049 4.049 11 N -0.275 5.275 12 C -0.072 4.072 13 C -0.135 4.135 14 C -0.106 4.106 15 C 0.008 3.992 16 O -0.403 6.403 17 C -0.138 4.138 18 C -0.076 4.076 19 H 0.073 0.927 20 H 0.010 0.990 21 H 0.010 0.990 22 H 0.085 0.915 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.780 -17.246 0.308 17.341 hybrid contribution 0.368 0.747 0.572 1.010 sum 2.148 -16.499 0.880 16.662 Atomic orbital electron populations 1.70107 1.07905 1.27889 1.51344 1.25983 0.95749 1.03394 0.94522 0.85461 0.78238 0.77866 0.79221 1.18983 1.20723 1.19214 1.21607 0.93528 0.92297 1.51123 0.92153 1.18925 0.94224 0.92048 0.94934 1.21974 0.95382 0.88630 0.98944 1.61970 1.28070 1.02387 1.35074 1.22062 0.96652 0.98720 0.89812 1.21486 0.97454 0.92732 1.01808 1.21194 0.96868 0.93945 0.98632 1.22189 0.95032 0.96237 0.85702 1.86451 1.66058 1.52299 1.35491 1.21528 0.98881 0.96334 0.97010 1.22176 0.93999 0.90756 1.00675 0.92721 0.98964 0.98996 0.91535 0.96561 0.95894 0.92983 0.92024 0.91448 0.91646 0.92946 0.91555 0.75446 0.91024 0.88709 0.90164 0.95331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.02 4.90 29.85 0.15 2.16 16 10 C 0.08 3.50 4.90 86.31 0.42 3.92 16 11 N -0.55 -21.05 4.66 -896.37 -4.17 -25.23 16 12 C 0.06 2.07 5.29 86.32 0.46 2.53 16 13 C -0.10 -2.93 5.25 30.65 0.16 -2.77 16 14 C -0.09 -2.10 2.49 -10.71 -0.03 -2.13 16 15 C 0.09 1.57 6.43 71.98 0.46 2.04 16 16 O -0.59 -11.73 13.26 -148.98 -1.98 -13.71 16 17 C -0.10 -2.25 5.38 30.65 0.16 -2.08 16 18 C 0.05 1.50 5.46 86.32 0.47 1.97 16 19 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 20 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 21 H -0.01 -0.50 6.43 -2.39 -0.02 -0.51 16 22 H 0.07 2.86 7.99 -2.39 -0.02 2.84 16 23 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 2.27 6.21 -2.39 -0.01 2.25 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.40 3.82 9.12 -74.06 -0.68 3.15 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.25 279.86 -0.51 -69.77 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.37 Total: 5.91 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 2.95 Total: -25.77 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -3.89 Total: -83.27 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.98 Total: -13.71 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -69.25 -0.51 -69.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034959112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.885 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds