Wall clock time and date at job start Sun Mar 29 2020 22:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48505 * 109.47182 * 240.00040 * 3 2 1 5 5 H 1.48500 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99977 * 3 2 1 7 7 C 1.37873 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47302 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.46845 * 111.00186 * 314.20924 * 11 10 9 13 13 C 1.53033 * 109.52544 * 174.16268 * 12 11 10 14 14 C 1.53121 * 109.28088 * 59.17927 * 13 12 11 15 15 C 1.53122 * 109.15732 * 302.34218 * 14 13 12 16 16 H 1.08996 * 109.54177 * 297.69943 * 15 14 13 17 17 C 1.52999 * 109.50187 * 177.59272 * 15 14 13 18 18 O 1.42905 * 109.46728 * 65.20317 * 17 15 14 19 19 C 1.46850 * 111.00081 * 189.99833 * 11 10 9 20 20 H 0.97003 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47018 * 60.00179 * 9 7 2 22 22 H 1.09002 * 109.46889 * 299.99888 * 9 7 2 23 23 H 1.09002 * 109.46914 * 59.99576 * 10 9 7 24 24 H 1.09007 * 109.47038 * 300.00335 * 10 9 7 25 25 H 1.09006 * 109.45944 * 294.17544 * 12 11 10 26 26 H 1.08998 * 109.46234 * 54.13783 * 12 11 10 27 27 H 1.09003 * 109.50396 * 179.11860 * 13 12 11 28 28 H 1.09000 * 109.50460 * 299.19142 * 13 12 11 29 29 H 1.09001 * 109.52298 * 182.44287 * 14 13 12 30 30 H 1.08995 * 109.52203 * 62.24887 * 14 13 12 31 31 H 1.09000 * 109.47486 * 305.20255 * 17 15 14 32 32 H 1.09001 * 109.47362 * 185.19532 * 17 15 14 33 33 H 0.96696 * 114.00036 * 179.97438 * 18 17 15 34 34 H 1.08997 * 109.46306 * 65.82397 * 19 11 10 35 35 H 1.09007 * 109.45324 * 305.84623 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 0.4197 -4.9115 0.9855 13 6 -0.4105 -6.1907 0.8574 14 6 0.4913 -7.4048 1.0966 15 6 1.6464 -7.3785 0.0919 16 1 1.2506 -7.4542 -0.9208 17 6 2.5857 -8.5555 0.3625 18 8 1.8976 -9.7820 0.1088 19 6 2.4171 -6.0648 0.2423 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 2.8721 -3.6034 0.8927 24 1 2.8721 -3.6050 -0.8873 25 1 0.8370 -4.8485 1.9906 26 1 -0.2164 -4.0456 0.8017 27 1 -1.2110 -6.1806 1.5971 28 1 -0.8401 -6.2471 -0.1428 29 1 -0.0864 -8.3195 0.9636 30 1 0.8895 -7.3685 2.1106 31 1 2.9105 -8.5295 1.4027 32 1 3.4549 -8.4846 -0.2914 33 1 2.4339 -10.5724 0.2598 34 1 2.8249 -5.9965 1.2507 35 1 3.2315 -6.0367 -0.4817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035151128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:18 Heat of formation + Delta-G solvation = -67.578668 kcal Electronic energy + Delta-G solvation = -14524.243563 eV Core-core repulsion = 12135.281544 eV Total energy + Delta-G solvation = -2388.962019 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00715 -36.76134 -34.12345 -32.46536 -31.22029 -29.16289 -25.63147 -25.01179 -22.68408 -22.04870 -19.75404 -19.31246 -17.38305 -16.51804 -15.28210 -15.02992 -14.55836 -14.36533 -14.17635 -13.85065 -13.11394 -12.79614 -12.55385 -12.22519 -12.08017 -11.59857 -11.10261 -10.92106 -10.79269 -10.58832 -10.50274 -10.28427 -10.12332 -9.89960 -9.81147 -9.28307 -9.05798 -8.33041 -7.65435 -5.99410 -4.01839 3.33866 3.38227 3.40558 4.03270 4.45395 4.67048 4.87618 5.04278 5.14735 5.35512 5.37462 5.48472 5.61748 5.66895 5.72307 5.86640 5.98956 6.07856 6.19662 6.26315 6.36404 6.40545 6.50334 6.65900 6.70056 6.94799 7.50096 7.55431 7.65146 7.82340 7.87251 8.06516 8.43830 9.04568 9.61753 11.11956 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.069338 B = 0.005728 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.724063 B = 4886.838390 C = 5189.998931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.050 3.950 13 C -0.118 4.118 14 C -0.108 4.108 15 C -0.085 4.085 16 H 0.084 0.916 17 C 0.081 3.919 18 O -0.572 6.572 19 C 0.063 3.937 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.021 0.979 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.375 0.625 34 H 0.027 0.973 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -15.480 2.233 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.078 4.078 13 C -0.156 4.156 14 C -0.146 4.146 15 C -0.104 4.104 16 H 0.103 0.897 17 C 0.003 3.997 18 O -0.377 6.377 19 C -0.066 4.066 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.221 0.779 34 H 0.045 0.955 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.702 -14.987 1.625 15.315 hybrid contribution 1.402 0.716 0.973 1.851 sum 4.104 -14.271 2.598 15.075 Atomic orbital electron populations 1.69956 1.06024 1.26724 1.50597 1.24987 0.94836 0.99172 0.95266 0.86648 0.79572 0.83121 0.78588 1.20212 1.21259 1.20316 1.21151 0.92965 0.91035 1.50980 0.92825 1.19244 0.94122 0.90453 0.97823 1.22315 0.97032 0.88117 0.98915 1.61984 1.11510 1.03295 1.49479 1.22215 0.94068 0.98639 0.92898 1.21628 0.97602 0.94238 1.02102 1.21543 0.96630 0.98462 0.97974 1.21162 0.95736 0.92103 1.01353 0.89731 1.22210 0.94330 0.84377 0.98767 1.86495 1.43414 1.15719 1.92043 1.21954 0.94955 0.90531 0.99127 0.92922 0.95645 0.96115 0.96307 0.91962 0.95717 0.88789 0.91965 0.91276 0.91677 0.92879 0.93909 0.93687 0.77898 0.95509 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.22 -27.88 -0.12 0.43 16 10 C 0.06 1.36 5.21 -3.83 -0.02 1.34 16 11 N -0.54 -10.20 4.81 -234.67 -1.13 -11.33 16 12 C 0.05 0.90 4.85 -3.84 -0.02 0.89 16 13 C -0.12 -1.78 6.09 -26.65 -0.16 -1.94 16 14 C -0.11 -1.49 5.16 -26.61 -0.14 -1.62 16 15 C -0.08 -1.16 2.59 -90.54 -0.23 -1.40 16 16 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 17 C 0.08 0.89 6.43 37.16 0.24 1.13 16 18 O -0.57 -6.22 13.25 -35.23 -0.47 -6.68 16 19 C 0.06 0.97 4.71 -3.83 -0.02 0.96 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 21 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.57 6.21 -51.93 -0.32 0.24 16 23 H 0.02 0.40 8.08 -51.93 -0.42 -0.01 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 1.94 5.81 -51.93 -0.30 1.64 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 2.22 9.12 45.56 0.42 2.64 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -31.12 278.74 -7.79 -38.91 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.23 Total: -1.74 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.88 Total: -13.86 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.39 Total: -37.55 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.47 Total: -6.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.12 -7.79 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035151128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.672 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds