Wall clock time and date at job start Sun Mar 29 2020 22:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99699 * 2 1 4 4 H 1.48505 * 109.47182 * 240.00040 * 3 2 1 5 5 H 1.48500 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99977 * 3 2 1 7 7 C 1.37873 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47302 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.46845 * 111.00186 * 314.20924 * 11 10 9 13 13 C 1.53033 * 109.52544 * 174.16268 * 12 11 10 14 14 C 1.53121 * 109.28088 * 59.17927 * 13 12 11 15 15 C 1.53122 * 109.15732 * 302.34218 * 14 13 12 16 16 H 1.08996 * 109.54177 * 297.69943 * 15 14 13 17 17 C 1.52999 * 109.50187 * 177.59272 * 15 14 13 18 18 O 1.42905 * 109.46728 * 65.20317 * 17 15 14 19 19 C 1.46850 * 111.00081 * 189.99833 * 11 10 9 20 20 H 0.97003 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47018 * 60.00179 * 9 7 2 22 22 H 1.09002 * 109.46889 * 299.99888 * 9 7 2 23 23 H 1.09002 * 109.46914 * 59.99576 * 10 9 7 24 24 H 1.09007 * 109.47038 * 300.00335 * 10 9 7 25 25 H 1.09006 * 109.45944 * 294.17544 * 12 11 10 26 26 H 1.08998 * 109.46234 * 54.13783 * 12 11 10 27 27 H 1.09003 * 109.50396 * 179.11860 * 13 12 11 28 28 H 1.09000 * 109.50460 * 299.19142 * 13 12 11 29 29 H 1.09001 * 109.52298 * 182.44287 * 14 13 12 30 30 H 1.08995 * 109.52203 * 62.24887 * 14 13 12 31 31 H 1.09000 * 109.47486 * 305.20255 * 17 15 14 32 32 H 1.09001 * 109.47362 * 185.19532 * 17 15 14 33 33 H 0.96696 * 114.00036 * 179.97438 * 18 17 15 34 34 H 1.08997 * 109.46306 * 65.82397 * 19 11 10 35 35 H 1.09007 * 109.45324 * 305.84623 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 0.4197 -4.9115 0.9855 13 6 -0.4105 -6.1907 0.8574 14 6 0.4913 -7.4048 1.0966 15 6 1.6464 -7.3785 0.0919 16 1 1.2506 -7.4542 -0.9208 17 6 2.5857 -8.5555 0.3625 18 8 1.8976 -9.7820 0.1088 19 6 2.4171 -6.0648 0.2423 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 2.8721 -3.6034 0.8927 24 1 2.8721 -3.6050 -0.8873 25 1 0.8370 -4.8485 1.9906 26 1 -0.2164 -4.0456 0.8017 27 1 -1.2110 -6.1806 1.5971 28 1 -0.8401 -6.2471 -0.1428 29 1 -0.0864 -8.3195 0.9636 30 1 0.8895 -7.3685 2.1106 31 1 2.9105 -8.5295 1.4027 32 1 3.4549 -8.4846 -0.2914 33 1 2.4339 -10.5724 0.2598 34 1 2.8249 -5.9965 1.2507 35 1 3.2315 -6.0367 -0.4817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035151128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:18 Heat of formation + Delta-G solvation = -90.665277 kcal Electronic energy + Delta-G solvation = -14525.244673 eV Core-core repulsion = 12135.281544 eV Total energy + Delta-G solvation = -2389.963129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30276 -37.76106 -35.78866 -34.31461 -32.43714 -31.04694 -26.88173 -26.73677 -24.30187 -23.40270 -21.27879 -20.64673 -18.64790 -18.19255 -16.68989 -16.55559 -16.11469 -15.88350 -15.32779 -15.27948 -14.54003 -14.26669 -13.97341 -13.86962 -13.46883 -13.04186 -12.85528 -12.78326 -12.44751 -12.02340 -11.96703 -11.69556 -11.56838 -11.34061 -11.19197 -10.97204 -10.77267 -10.53403 -9.18267 -8.20486 -6.32178 1.40113 1.43478 1.51419 2.40065 2.93031 3.12806 3.52823 3.79842 3.91396 4.03891 4.31238 4.37688 4.47822 4.49817 4.54245 4.59317 4.65202 4.66429 4.82499 4.92922 5.01543 5.04229 5.11935 5.18699 5.35922 5.42748 5.47863 5.65339 5.77784 6.08349 6.31990 6.33273 6.84112 6.97488 7.36952 8.91379 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.069338 B = 0.005728 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.724063 B = 4886.838390 C = 5189.998931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.078 3.922 11 N -0.550 5.550 12 C 0.052 3.948 13 C -0.112 4.112 14 C -0.102 4.102 15 C -0.083 4.083 16 H 0.068 0.932 17 C 0.088 3.912 18 O -0.589 6.589 19 C 0.063 3.937 20 H 0.264 0.736 21 H -0.008 1.008 22 H 0.001 0.999 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.397 0.603 34 H 0.034 0.966 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -16.399 2.679 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.049 4.049 11 N -0.274 5.274 12 C -0.076 4.076 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.102 4.102 16 H 0.087 0.913 17 C 0.010 3.990 18 O -0.398 6.398 19 C -0.065 4.065 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.019 0.981 23 H 0.039 0.961 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.052 0.948 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.206 -15.945 2.074 16.621 hybrid contribution 0.897 0.948 0.827 1.545 sum 5.103 -14.997 2.901 16.105 Atomic orbital electron populations 1.70100 1.07840 1.27887 1.51317 1.25962 0.95749 1.03332 0.94528 0.85474 0.78250 0.77943 0.79201 1.19134 1.20774 1.19131 1.21598 0.93549 0.92260 1.51135 0.92146 1.19063 0.94316 0.92164 0.95215 1.21986 0.95778 0.88115 0.99060 1.61942 1.12188 1.03148 1.50159 1.22138 0.93817 0.99039 0.92598 1.21589 0.97857 0.93362 1.02171 1.21500 0.96384 0.97645 0.98445 1.21109 0.96148 0.92464 1.00476 0.91326 1.22066 0.93584 0.83447 0.99907 1.86429 1.44543 1.16581 1.92201 1.22038 0.94768 0.89851 0.99822 0.92724 0.99008 0.98085 0.96062 0.91737 0.95781 0.92337 0.90405 0.92141 0.90818 0.91990 0.92534 0.92344 0.75314 0.94753 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.62 4.22 29.85 0.13 1.74 16 10 C 0.08 3.42 5.21 86.30 0.45 3.87 16 11 N -0.55 -20.90 4.81 -896.36 -4.31 -25.20 16 12 C 0.05 1.93 4.85 86.32 0.42 2.35 16 13 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 14 C -0.10 -2.60 5.16 30.68 0.16 -2.44 16 15 C -0.08 -2.12 2.59 -10.74 -0.03 -2.14 16 16 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 17 C 0.09 1.66 6.43 71.98 0.46 2.13 16 18 O -0.59 -11.03 13.25 -148.98 -1.97 -13.01 16 19 C 0.06 1.85 4.71 86.33 0.41 2.26 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H 0.00 0.05 6.21 -2.39 -0.01 0.04 16 23 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 24 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 25 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 2.57 5.81 -2.39 -0.01 2.55 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.78 7.90 -2.39 -0.02 1.77 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.40 3.42 9.12 -74.06 -0.68 2.74 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 2.17 8.12 -2.38 -0.02 2.15 16 Total: -1.00 -67.23 278.74 -0.72 -67.96 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.37 Total: 7.07 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 2.88 Total: -26.26 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -4.02 Total: -82.37 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.97 Total: -13.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.23 -0.72 -67.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035151128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.708 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds