Wall clock time and date at job start Sun Mar 29 2020 22:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00320 * 2 1 4 4 H 1.48500 * 109.47572 * 240.00035 * 3 2 1 5 5 H 1.48498 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46964 * 119.99869 * 3 2 1 7 7 C 1.37881 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47054 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47368 * 180.02562 * 10 9 7 12 12 C 1.46840 * 110.99949 * 293.95346 * 11 10 9 13 13 C 1.53034 * 109.52662 * 185.83824 * 12 11 10 14 14 C 1.53119 * 109.27731 * 300.82454 * 13 12 11 15 15 C 1.53116 * 109.16367 * 57.64931 * 14 13 12 16 16 H 1.09001 * 109.50426 * 62.32675 * 15 14 13 17 17 C 1.52999 * 109.50556 * 182.40650 * 15 14 13 18 18 O 1.42903 * 109.47256 * 295.00417 * 17 15 14 19 19 C 1.46845 * 110.99759 * 58.16225 * 11 10 9 20 20 H 0.97006 * 119.99555 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47308 * 60.00748 * 9 7 2 22 22 H 1.08997 * 109.47167 * 299.99864 * 9 7 2 23 23 H 1.08998 * 109.46938 * 59.99804 * 10 9 7 24 24 H 1.09009 * 109.46725 * 300.00202 * 10 9 7 25 25 H 1.09005 * 109.46421 * 65.82388 * 12 11 10 26 26 H 1.09004 * 109.45249 * 305.85232 * 12 11 10 27 27 H 1.08997 * 109.50769 * 180.87719 * 13 12 11 28 28 H 1.09000 * 109.53761 * 60.77846 * 13 12 11 29 29 H 1.09000 * 109.52397 * 297.74242 * 14 13 12 30 30 H 1.09001 * 109.52267 * 177.55732 * 14 13 12 31 31 H 1.08997 * 109.47286 * 174.99978 * 17 15 14 32 32 H 1.09008 * 109.47201 * 54.99758 * 17 15 14 33 33 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 34 34 H 1.08998 * 109.46753 * 54.14735 * 19 11 10 35 35 H 1.09003 * 109.46692 * 294.17691 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7652 -5.1121 1.2514 13 6 0.1327 -6.5054 1.2768 14 6 -0.8058 -6.6565 0.0765 15 6 -0.0150 -6.4189 -1.2130 16 1 0.7655 -7.1741 -1.3056 17 6 -0.9579 -6.5089 -2.4145 18 8 -1.4659 -7.8402 -2.5228 19 6 0.6217 -5.0280 -1.1662 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 -0.0178 -4.3566 1.3184 26 1 1.4452 -5.0064 2.0967 27 1 -0.4335 -6.6313 2.1996 28 1 0.9155 -7.2620 1.2241 29 1 -1.6113 -5.9258 0.1496 30 1 -1.2253 -7.6625 0.0664 31 1 -0.4137 -6.2525 -3.3234 32 1 -1.7866 -5.8138 -2.2789 33 1 -2.0718 -7.9708 -3.2650 34 1 1.1973 -4.8613 -2.0766 35 1 -0.1606 -4.2730 -1.0879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035151129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:21 Heat of formation + Delta-G solvation = -70.840490 kcal Electronic energy + Delta-G solvation = -14718.446770 eV Core-core repulsion = 12329.343308 eV Total energy + Delta-G solvation = -2389.103462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99490 -36.67532 -34.08234 -32.44970 -31.17573 -28.88479 -25.50492 -25.06783 -22.93333 -21.64043 -20.39686 -18.92402 -17.24037 -16.40702 -15.21344 -14.96771 -14.51509 -14.38113 -14.14807 -13.52136 -13.24377 -12.81267 -12.32154 -12.15047 -11.99941 -11.46484 -11.19136 -10.89751 -10.78513 -10.74932 -10.44566 -10.14445 -9.99957 -9.86848 -9.76919 -9.67127 -9.15033 -8.36539 -7.46414 -6.03090 -4.06002 3.31366 3.35672 3.38319 4.15310 4.43409 4.75890 4.98475 5.12441 5.26138 5.32266 5.47703 5.61205 5.70462 5.74467 5.88245 5.98574 6.11055 6.19298 6.21659 6.28479 6.43885 6.49360 6.52875 6.64917 6.74928 6.92752 7.54890 7.55188 7.63863 7.70891 7.87669 7.98657 8.40965 9.00987 9.58181 11.07946 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.006690 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.244668 B = 4184.601928 C = 4443.737927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.055 0.945 9 C -0.009 4.009 10 C 0.057 3.943 11 N -0.540 5.540 12 C 0.052 3.948 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.083 4.083 16 H 0.080 0.920 17 C 0.080 3.920 18 O -0.574 6.574 19 C 0.061 3.939 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.375 0.625 34 H 0.069 0.931 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 -12.100 -2.422 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.048 4.048 10 C -0.070 4.070 11 N -0.264 5.264 12 C -0.076 4.076 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.102 4.102 16 H 0.098 0.902 17 C 0.002 3.998 18 O -0.379 6.379 19 C -0.067 4.067 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.221 0.779 34 H 0.088 0.912 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.661 -12.441 -1.913 12.697 hybrid contribution -0.535 1.883 -0.474 2.014 sum -2.196 -10.558 -2.387 11.045 Atomic orbital electron populations 1.69959 1.06102 1.26712 1.50745 1.25027 0.94840 0.99294 0.95224 0.86644 0.79575 0.83044 0.78665 1.20206 1.21309 1.20202 1.21139 0.93010 0.90959 1.50774 0.92633 1.19668 0.95015 0.92784 0.97288 1.22324 0.96839 0.86765 1.01065 1.62260 1.27129 1.35469 1.01532 1.22050 0.97009 0.95865 0.92698 1.21595 0.98550 0.97664 0.97531 1.21533 0.97658 1.01431 0.94077 1.21161 0.97026 0.98474 0.93547 0.90183 1.22220 0.96506 0.83123 0.97972 1.86466 1.66669 1.30408 1.54335 1.21939 0.95773 0.94544 0.94477 0.92968 0.96384 0.96515 0.91980 0.91999 0.94070 0.91329 0.92108 0.91670 0.92507 0.91771 0.93610 0.93586 0.77926 0.91229 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C -0.01 -0.24 4.27 -27.88 -0.12 -0.36 16 10 C 0.06 1.22 5.30 -3.82 -0.02 1.20 16 11 N -0.54 -10.11 4.86 -234.67 -1.14 -11.25 16 12 C 0.05 0.91 5.05 -3.84 -0.02 0.89 16 13 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 14 C -0.11 -1.59 5.15 -26.61 -0.14 -1.73 16 15 C -0.08 -1.24 2.59 -90.54 -0.23 -1.47 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 17 C 0.08 1.02 6.43 37.16 0.24 1.26 16 18 O -0.57 -6.91 13.25 -35.23 -0.47 -7.37 16 19 C 0.06 1.07 4.12 -3.83 -0.02 1.05 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.49 6.50 -51.93 -0.34 0.15 16 22 H 0.02 0.46 6.68 -51.93 -0.35 0.11 16 23 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 24 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 25 H 0.04 0.81 6.76 -51.93 -0.35 0.46 16 26 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.37 2.70 9.12 45.56 0.42 3.11 16 34 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 35 H 0.05 0.89 6.61 -51.93 -0.34 0.54 16 LS Contribution 276.68 15.07 4.17 4.17 Total: -1.00 -30.90 276.68 -7.74 -38.64 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.13 Total: -0.13 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.88 Total: -14.50 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.40 Total: -37.47 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.47 Total: -7.37 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.90 -7.74 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035151129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.201 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds