Wall clock time and date at job start Sun Mar 29 2020 22:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00320 * 2 1 4 4 H 1.48500 * 109.47572 * 240.00035 * 3 2 1 5 5 H 1.48498 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46964 * 119.99869 * 3 2 1 7 7 C 1.37881 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99586 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47054 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47368 * 180.02562 * 10 9 7 12 12 C 1.46840 * 110.99949 * 293.95346 * 11 10 9 13 13 C 1.53034 * 109.52662 * 185.83824 * 12 11 10 14 14 C 1.53119 * 109.27731 * 300.82454 * 13 12 11 15 15 C 1.53116 * 109.16367 * 57.64931 * 14 13 12 16 16 H 1.09001 * 109.50426 * 62.32675 * 15 14 13 17 17 C 1.52999 * 109.50556 * 182.40650 * 15 14 13 18 18 O 1.42903 * 109.47256 * 295.00417 * 17 15 14 19 19 C 1.46845 * 110.99759 * 58.16225 * 11 10 9 20 20 H 0.97006 * 119.99555 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47308 * 60.00748 * 9 7 2 22 22 H 1.08997 * 109.47167 * 299.99864 * 9 7 2 23 23 H 1.08998 * 109.46938 * 59.99804 * 10 9 7 24 24 H 1.09009 * 109.46725 * 300.00202 * 10 9 7 25 25 H 1.09005 * 109.46421 * 65.82388 * 12 11 10 26 26 H 1.09004 * 109.45249 * 305.85232 * 12 11 10 27 27 H 1.08997 * 109.50769 * 180.87719 * 13 12 11 28 28 H 1.09000 * 109.53761 * 60.77846 * 13 12 11 29 29 H 1.09000 * 109.52397 * 297.74242 * 14 13 12 30 30 H 1.09001 * 109.52267 * 177.55732 * 14 13 12 31 31 H 1.08997 * 109.47286 * 174.99978 * 17 15 14 32 32 H 1.09008 * 109.47201 * 54.99758 * 17 15 14 33 33 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 34 34 H 1.08998 * 109.46753 * 54.14735 * 19 11 10 35 35 H 1.09003 * 109.46692 * 294.17691 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7652 -5.1121 1.2514 13 6 0.1327 -6.5054 1.2768 14 6 -0.8058 -6.6565 0.0765 15 6 -0.0150 -6.4189 -1.2130 16 1 0.7655 -7.1741 -1.3056 17 6 -0.9579 -6.5089 -2.4145 18 8 -1.4659 -7.8402 -2.5228 19 6 0.6217 -5.0280 -1.1662 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8719 -3.6043 -0.8906 25 1 -0.0178 -4.3566 1.3184 26 1 1.4452 -5.0064 2.0967 27 1 -0.4335 -6.6313 2.1996 28 1 0.9155 -7.2620 1.2241 29 1 -1.6113 -5.9258 0.1496 30 1 -1.2253 -7.6625 0.0664 31 1 -0.4137 -6.2525 -3.3234 32 1 -1.7866 -5.8138 -2.2789 33 1 -2.0718 -7.9708 -3.2650 34 1 1.1973 -4.8613 -2.0766 35 1 -0.1606 -4.2730 -1.0879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035151129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:20 Heat of formation + Delta-G solvation = -93.694473 kcal Electronic energy + Delta-G solvation = -14719.437793 eV Core-core repulsion = 12329.343308 eV Total energy + Delta-G solvation = -2390.094485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37541 -37.78242 -35.76173 -34.31903 -32.44999 -30.78766 -26.90072 -26.68768 -24.70214 -23.04393 -21.88108 -20.35334 -18.60973 -18.17776 -16.69865 -16.46046 -16.17702 -15.80498 -15.42202 -15.03327 -14.81123 -14.23364 -14.07763 -13.61692 -13.47571 -13.07642 -12.82588 -12.69587 -12.62147 -12.09655 -11.97053 -11.64905 -11.58919 -11.37567 -11.25991 -11.16701 -10.80360 -10.56134 -9.12490 -8.22567 -6.34954 1.38411 1.41421 1.49371 2.38476 2.94115 3.09875 3.52924 3.79010 3.90965 4.05271 4.30532 4.36514 4.46690 4.54456 4.55574 4.62224 4.67418 4.71585 4.88774 4.94950 4.99326 5.03022 5.10234 5.18829 5.32588 5.44581 5.49320 5.56563 5.73598 6.01825 6.24695 6.33385 6.82358 6.92627 7.34518 8.88214 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043998 B = 0.006690 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.244668 B = 4184.601928 C = 4443.737927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.002 3.998 10 C 0.070 3.930 11 N -0.534 5.534 12 C 0.050 3.950 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.078 4.078 16 H 0.081 0.919 17 C 0.085 3.915 18 O -0.584 6.584 19 C 0.063 3.937 20 H 0.263 0.737 21 H -0.006 1.006 22 H -0.011 1.011 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.011 0.989 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -12.800 -2.641 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.036 4.036 10 C -0.058 4.058 11 N -0.257 5.257 12 C -0.078 4.078 13 C -0.145 4.145 14 C -0.145 4.145 15 C -0.097 4.097 16 H 0.100 0.900 17 C 0.007 3.993 18 O -0.392 6.392 19 C -0.065 4.065 20 H 0.072 0.928 21 H 0.012 0.988 22 H 0.007 0.993 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -0.926 -13.169 -2.146 13.375 hybrid contribution -0.812 2.063 -0.415 2.255 sum -1.738 -11.106 -2.561 11.529 Atomic orbital electron populations 1.70102 1.07890 1.27813 1.51572 1.25991 0.95737 1.03425 0.94568 0.85485 0.78254 0.77950 0.79272 1.19041 1.20911 1.19134 1.21603 0.93625 0.92219 1.50763 0.91949 1.19515 0.95154 0.94243 0.94723 1.22104 0.95959 0.86346 1.01378 1.62327 1.27603 1.33203 1.02540 1.22128 0.96249 0.97146 0.92268 1.21566 0.98855 0.95510 0.98590 1.21523 0.97290 1.01816 0.93835 1.21084 0.97453 0.96237 0.94924 0.90042 1.22054 0.96171 0.83688 0.97375 1.86398 1.67418 1.29516 1.55869 1.21946 0.94824 0.95736 0.94012 0.92820 0.98792 0.99314 0.91619 0.91559 0.97044 0.90916 0.90169 0.90594 0.93577 0.90362 0.92555 0.93800 0.75370 0.91033 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.00 0.11 4.27 29.85 0.13 0.23 16 10 C 0.07 3.00 5.30 86.31 0.46 3.46 16 11 N -0.53 -19.94 4.86 -896.36 -4.35 -24.30 16 12 C 0.05 1.77 5.05 86.33 0.44 2.20 16 13 C -0.11 -2.97 6.09 30.65 0.19 -2.78 16 14 C -0.11 -2.97 5.15 30.67 0.16 -2.81 16 15 C -0.08 -2.23 2.59 -10.74 -0.03 -2.26 16 16 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 17 C 0.09 2.06 6.43 71.98 0.46 2.53 16 18 O -0.58 -12.67 13.25 -148.98 -1.97 -14.65 16 19 C 0.06 2.23 4.12 86.33 0.36 2.58 16 20 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 21 H -0.01 -0.36 6.50 -2.39 -0.02 -0.37 16 22 H -0.01 -0.67 6.68 -2.39 -0.02 -0.68 16 23 H 0.07 2.76 8.06 -2.39 -0.02 2.74 16 24 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 25 H 0.01 0.46 6.76 -2.38 -0.02 0.45 16 26 H 0.07 2.46 8.06 -2.39 -0.02 2.44 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.99 7.90 -2.39 -0.02 1.97 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.40 4.71 9.12 -74.06 -0.68 4.04 16 34 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 35 H 0.02 0.67 6.61 -2.39 -0.02 0.65 16 Total: -1.00 -66.08 276.68 -0.79 -66.87 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.38 Total: 9.97 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 2.85 Total: -27.29 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -4.07 Total: -81.33 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.97 Total: -14.65 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.08 -0.79 -66.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035151129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.825 kcal (2) G-P(sol) polarization free energy of solvation -66.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds