Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.51559 * 2 1 4 4 C 1.53302 * 109.51343 * 239.89961 * 2 1 3 5 5 N 1.47150 * 108.38597 * 187.77300 * 4 2 1 6 6 C 1.34769 * 120.98116 * 230.55433 * 5 4 2 7 7 O 1.21697 * 120.00036 * 174.77058 * 6 5 4 8 8 C 1.46373 * 120.00265 * 354.77462 * 6 5 4 9 9 H 1.07999 * 120.00015 * 4.99489 * 8 6 5 10 10 C 1.40046 * 120.00190 * 185.00320 * 8 6 5 11 11 N 1.30673 * 120.00349 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00086 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47276 * 89.99590 * 12 10 8 14 14 H 1.48503 * 109.46856 * 209.99498 * 12 10 8 15 15 H 1.48497 * 109.46780 * 329.99319 * 12 10 8 16 16 C 1.47151 * 118.03655 * 50.53768 * 5 4 2 17 17 H 1.08999 * 109.68559 * 189.74171 * 16 5 4 18 18 C 1.52997 * 109.68541 * 69.22122 * 16 5 4 19 19 C 1.53298 * 108.38202 * 309.46084 * 16 5 4 20 20 O 1.42957 * 109.26468 * 52.28320 * 19 16 5 21 21 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46974 * 299.99437 * 1 2 3 23 23 H 1.08995 * 109.47687 * 59.99984 * 1 2 3 24 24 H 1.09004 * 109.68027 * 307.49954 * 4 2 1 25 25 H 1.08994 * 109.67966 * 68.04995 * 4 2 1 26 26 H 0.96994 * 120.00880 * 180.02562 * 11 10 8 27 27 H 1.09008 * 109.47135 * 60.00001 * 18 16 5 28 28 H 1.09000 * 109.47382 * 180.02562 * 18 16 5 29 29 H 1.09001 * 109.47130 * 300.00476 * 18 16 5 30 30 H 1.09005 * 109.51206 * 172.22687 * 19 16 5 31 31 H 1.08999 * 109.51709 * 292.32785 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5011 -0.8757 -1.1341 6 6 4.3192 -0.5025 -2.1379 7 8 5.5261 -0.5460 -1.9875 8 6 3.7562 -0.0447 -3.4091 9 1 2.6878 0.0710 -3.5161 10 6 4.6030 0.2431 -4.4868 11 7 5.8958 0.1035 -4.3574 12 14 3.8845 0.8267 -6.1094 13 1 3.7940 2.3089 -6.1062 14 1 4.7600 0.3866 -7.2252 15 1 2.5283 0.2483 -6.2866 16 6 4.0406 -1.4459 0.1106 17 1 5.1252 -1.3377 0.1241 18 6 3.6694 -2.9273 0.2021 19 6 3.4313 -0.6861 1.2944 20 8 2.0075 -0.6759 1.1658 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.5757 -1.7073 -1.3216 25 1 1.8030 -0.1389 -2.1377 26 1 6.4824 0.3031 -5.1036 27 1 4.0888 -3.4604 -0.6512 28 1 4.0702 -3.3460 1.1253 29 1 2.5844 -3.0310 0.1976 30 1 3.7091 -1.1797 2.2257 31 1 3.8037 0.3383 1.3001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035787713.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = -84.595713 kcal Electronic energy + Delta-G solvation = -15000.831326 eV Core-core repulsion = 12475.298298 eV Total energy + Delta-G solvation = -2525.533028 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31707 -36.67162 -33.73557 -32.95805 -32.40914 -29.71633 -26.27931 -25.83121 -25.34755 -21.99228 -20.58184 -18.49583 -16.75191 -16.01274 -15.95741 -14.88809 -14.69551 -14.31106 -14.02330 -13.27017 -12.89144 -12.55825 -12.17110 -11.88369 -11.82645 -11.54045 -11.44207 -11.06590 -10.96070 -10.93752 -10.62328 -10.28179 -10.10200 -9.88022 -9.33976 -8.87967 -7.62235 -7.20880 -6.23607 -4.69108 3.10887 3.17848 3.20879 4.01000 4.12427 4.44691 4.51677 5.21636 5.39698 5.49135 5.53513 5.56578 5.80937 5.85767 5.90655 6.00368 6.07690 6.16032 6.21934 6.28857 6.34414 6.52530 6.59420 6.79155 7.40755 7.53912 7.60889 8.08378 8.31030 8.97869 9.38695 10.53114 10.71551 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036378 B = 0.010459 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.509167 B = 2676.445649 C = 3206.424634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.057 0.943 4 C 0.097 3.903 5 N -0.640 5.640 6 C 0.560 3.440 7 O -0.577 6.577 8 C -0.544 4.544 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.767 5.767 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.107 3.893 17 H 0.097 0.903 18 C -0.150 4.150 19 C 0.057 3.943 20 O -0.385 6.385 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.269 0.731 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 -0.828 6.054 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.075 0.925 4 C -0.028 4.028 5 N -0.379 5.379 6 C 0.367 3.633 7 O -0.460 6.460 8 C -0.581 4.581 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.188 1.188 16 C 0.002 3.998 17 H 0.115 0.885 18 C -0.208 4.208 19 C -0.020 4.020 20 O -0.304 6.304 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.804 -0.923 6.158 9.984 hybrid contribution -0.205 0.366 -0.987 1.072 sum -8.009 -0.557 5.171 9.550 Atomic orbital electron populations 1.21699 0.93328 1.02596 1.02103 1.22551 0.94465 0.95626 0.86314 0.92462 1.22073 0.83085 0.99705 0.97922 1.48332 1.05175 1.67964 1.16392 1.18269 0.85359 0.77033 0.82672 1.90590 1.14643 1.59100 1.81620 1.20958 0.93992 1.47826 0.95303 0.90972 1.25730 0.94407 0.93301 0.99776 1.70008 1.03419 1.35165 1.31015 0.86385 0.79709 0.79434 0.81352 1.19680 1.20404 1.18834 1.21400 1.00255 0.92416 0.85706 0.88503 1.21986 1.01553 0.96391 1.00887 1.22931 0.81112 0.99722 0.98281 1.87819 1.21187 1.77790 1.43627 0.92001 0.92265 0.91015 0.93190 0.88460 0.92034 0.92701 0.92951 0.92664 0.89050 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.15 0.36 -1.44 16 2 C 0.07 1.15 3.40 -26.58 -0.09 1.06 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.10 1.87 5.40 -3.53 -0.02 1.85 16 5 N -0.64 -14.88 2.71 -166.39 -0.45 -15.33 16 6 C 0.56 16.06 7.63 -12.99 -0.10 15.96 16 7 O -0.58 -18.73 14.51 5.19 0.08 -18.65 16 8 C -0.54 -15.22 8.86 -35.63 -0.32 -15.54 16 9 H 0.07 1.83 5.76 -52.49 -0.30 1.53 16 10 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 11 N -0.77 -22.92 11.84 55.55 0.66 -22.26 16 12 Si 0.91 19.92 29.56 -169.99 -5.02 14.89 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 16 C 0.11 2.17 3.24 -67.42 -0.22 1.95 16 17 H 0.10 2.17 7.06 -51.93 -0.37 1.81 16 18 C -0.15 -2.64 9.24 37.16 0.34 -2.30 16 19 C 0.06 0.98 6.36 37.31 0.24 1.22 16 20 O -0.39 -6.68 10.02 -35.23 -0.35 -7.03 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 25 H 0.10 1.91 5.50 -51.93 -0.29 1.63 16 26 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 27 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.95 7.23 -51.93 -0.38 0.57 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 255.80 15.07 3.85 3.85 Total: -1.00 -33.40 255.80 -5.39 -38.78 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.24 Total: 0.64 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.10 Total: 5.10 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.21 Total: -37.59 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.28 Total: -25.68 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.40 -5.39 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787713.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.811 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds