Wall clock time and date at job start Sun Mar 29 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70822 * 2 1 4 4 C 1.52883 * 109.61882 * 239.70423 * 2 1 3 5 5 O 1.42961 * 109.30050 * 188.11150 * 4 2 1 6 6 C 1.42962 * 114.16461 * 62.45216 * 5 4 2 7 7 H 1.09004 * 109.51460 * 57.33802 * 6 5 4 8 8 C 1.52994 * 109.55596 * 177.47308 * 6 5 4 9 9 C 1.53293 * 109.22115 * 297.41695 * 6 5 4 10 10 N 1.47147 * 109.68766 * 120.54431 * 2 1 3 11 11 C 1.34785 * 120.97663 * 350.28175 * 10 2 1 12 12 O 1.21679 * 120.00161 * 354.20653 * 11 10 2 13 13 C 1.46375 * 119.99531 * 174.48659 * 11 10 2 14 14 H 1.07994 * 120.00366 * 5.16621 * 13 11 10 15 15 C 1.40047 * 119.99548 * 185.17434 * 13 11 10 16 16 N 1.30672 * 120.00312 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00084 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46769 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46841 * 119.99700 * 17 15 13 20 20 H 1.48493 * 109.47191 * 240.00013 * 17 15 13 21 21 H 1.08998 * 109.46696 * 308.01446 * 1 2 3 22 22 H 1.09002 * 109.47336 * 68.02053 * 1 2 3 23 23 H 1.09002 * 109.46665 * 188.01741 * 1 2 3 24 24 H 1.09005 * 109.58496 * 68.10036 * 4 2 1 25 25 H 1.08999 * 109.36567 * 307.99503 * 4 2 1 26 26 H 1.08993 * 109.47453 * 179.77212 * 8 6 5 27 27 H 1.09012 * 109.46574 * 299.76793 * 8 6 5 28 28 H 1.08995 * 109.47367 * 59.76423 * 8 6 5 29 29 H 1.09005 * 109.68643 * 292.58108 * 9 6 5 30 30 H 1.09004 * 109.68558 * 172.02439 * 9 6 5 31 31 H 0.96994 * 120.00327 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0433 -0.7265 -1.2434 5 8 3.4602 -0.8891 -1.1444 6 6 3.8813 -1.6922 -0.0392 7 1 3.4130 -2.6744 -0.1035 8 6 5.4029 -1.8485 -0.0700 9 6 3.4631 -1.0102 1.2685 10 7 2.0257 -0.7041 1.1932 11 6 1.1870 -1.0630 2.1854 12 8 0.0217 -0.7142 2.1530 13 6 1.6795 -1.8673 3.3048 14 1 2.7308 -2.1027 3.3793 15 6 0.7871 -2.3317 4.2792 16 7 -0.4849 -2.0467 4.1893 17 14 1.4153 -3.3588 5.7075 18 1 2.8837 -3.5398 5.5789 19 1 1.1114 -2.6670 6.9859 20 1 0.7503 -4.6864 5.6928 21 1 -0.3633 0.6329 0.8097 22 1 -0.3634 0.3846 -0.9530 23 1 -0.3633 -1.0177 0.1433 24 1 1.8052 -0.1422 -2.1323 25 1 1.5684 -1.7051 -1.3121 26 1 5.7228 -2.4575 0.7754 27 1 5.6995 -2.3335 -1.0001 28 1 5.8704 -0.8658 -0.0075 29 1 4.0286 -0.0875 1.3985 30 1 3.6525 -1.6789 2.1082 31 1 -1.1029 -2.3680 4.8643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035787717.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:14 Heat of formation + Delta-G solvation = -94.593108 kcal Electronic energy + Delta-G solvation = -15071.787356 eV Core-core repulsion = 12545.820809 eV Total energy + Delta-G solvation = -2525.966547 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97228 -38.67820 -35.42895 -34.76744 -34.22843 -31.43948 -28.26333 -27.18759 -26.45922 -23.55963 -22.29454 -20.72606 -18.47810 -17.70962 -17.38605 -16.85686 -16.14497 -15.91810 -15.64550 -15.33816 -14.57359 -13.86638 -13.80018 -13.32794 -13.11388 -13.05269 -12.92243 -12.80006 -12.65674 -12.42156 -12.07462 -11.93403 -11.87556 -11.56069 -11.01483 -10.89769 -9.33025 -8.99947 -8.24580 -6.84401 1.38447 1.39215 1.56185 2.21213 2.45834 2.61633 2.85957 3.58459 3.80724 4.04498 4.14470 4.16131 4.21368 4.39597 4.61082 4.64101 4.70306 4.82849 4.86424 4.96039 5.07374 5.21908 5.32924 5.37198 5.53472 5.70075 6.10768 6.20627 6.36135 6.87787 7.39486 8.47269 8.66816 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.011380 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.557016 B = 2459.885296 C = 3182.887760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.109 3.891 3 H 0.061 0.939 4 C 0.063 3.937 5 O -0.388 6.388 6 C 0.071 3.929 7 H 0.048 0.952 8 C -0.132 4.132 9 C 0.091 3.909 10 N -0.651 5.651 11 C 0.541 3.459 12 O -0.609 6.609 13 C -0.571 4.571 14 H 0.090 0.910 15 C 0.031 3.969 16 N -0.820 5.820 17 Si 0.992 3.008 18 H -0.245 1.245 19 H -0.271 1.271 20 H -0.269 1.269 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.029 0.971 24 H 0.128 0.872 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.808 -0.947 -6.376 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.005 3.995 3 H 0.079 0.921 4 C -0.015 4.015 5 O -0.307 6.307 6 C 0.012 3.988 7 H 0.066 0.934 8 C -0.189 4.189 9 C -0.033 4.033 10 N -0.389 5.389 11 C 0.347 3.653 12 O -0.495 6.495 13 C -0.608 4.608 14 H 0.108 0.892 15 C -0.184 4.184 16 N -0.450 5.450 17 Si 0.812 3.188 18 H -0.168 1.168 19 H -0.196 1.196 20 H -0.194 1.194 21 H 0.064 0.936 22 H 0.084 0.916 23 H 0.048 0.952 24 H 0.146 0.854 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.131 -0.675 -6.466 11.209 hybrid contribution -0.490 -0.377 0.920 1.109 sum 8.641 -1.052 -5.546 10.322 Atomic orbital electron populations 1.21710 0.93549 1.01430 0.99917 1.21671 0.95510 0.95659 0.86644 0.92082 1.22961 0.81082 0.99723 0.97690 1.87841 1.22156 1.72155 1.48538 1.22626 0.97810 0.92796 0.85519 0.93377 1.21698 0.90089 1.03398 1.03736 1.22333 0.81332 1.00403 0.99195 1.48283 1.08304 1.62186 1.20101 1.18597 0.84583 0.79872 0.82260 1.90582 1.19596 1.59806 1.79499 1.21542 0.96301 1.34690 1.08243 0.89171 1.26919 0.94279 0.95930 1.01238 1.70173 1.04633 1.37165 1.33044 0.85046 0.80025 0.77415 0.76321 1.16764 1.19568 1.19429 0.93612 0.91613 0.95221 0.85377 0.94108 0.89320 0.90759 0.91243 0.92105 0.88779 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 7.63 71.98 0.55 -4.18 16 2 C 0.11 4.43 3.67 44.83 0.16 4.59 16 3 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.06 2.08 6.26 71.94 0.45 2.53 16 5 O -0.39 -12.80 10.39 -148.98 -1.55 -14.34 16 6 C 0.07 2.25 3.40 30.69 0.10 2.36 16 7 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 8 C -0.13 -2.98 9.57 71.98 0.69 -2.30 16 9 C 0.09 3.43 5.85 86.35 0.50 3.93 16 10 N -0.65 -30.56 3.03 -799.33 -2.42 -32.98 16 11 C 0.54 31.32 7.40 86.36 0.64 31.96 16 12 O -0.61 -39.42 10.82 -4.28 -0.05 -39.46 16 13 C -0.57 -32.03 8.88 24.83 0.22 -31.81 16 14 H 0.09 4.53 5.69 -2.91 -0.02 4.51 16 15 C 0.03 1.73 5.50 85.30 0.47 2.20 16 16 N -0.82 -49.71 11.84 21.84 0.26 -49.45 16 17 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 18 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H 0.04 2.30 6.59 -2.39 -0.02 2.28 16 22 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 23 H 0.03 1.47 7.00 -2.39 -0.02 1.45 16 24 H 0.13 3.29 8.14 -2.38 -0.02 3.27 16 25 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.09 3.63 5.39 -2.38 -0.01 3.61 16 31 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 Total: -1.00 -72.25 251.33 3.18 -69.07 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.12 Total: 15.37 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 3.79 Total: 9.28 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.16 Total: -82.43 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.59 Total: -53.81 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -72.25 3.18 -69.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787717.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.526 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds