Wall clock time and date at job start Sun Mar 29 2020 21:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.51361 * 2 1 4 4 C 1.53296 * 109.51161 * 239.89451 * 2 1 3 5 5 N 1.47264 * 108.32778 * 187.76531 * 4 2 1 6 6 C 1.34766 * 120.95937 * 230.49082 * 5 4 2 7 7 O 1.21693 * 120.00188 * 185.68532 * 6 5 4 8 8 C 1.46375 * 120.00517 * 5.68216 * 6 5 4 9 9 H 1.08001 * 119.99480 * 8.30364 * 8 6 5 10 10 C 1.40045 * 120.00697 * 188.30977 * 8 6 5 11 11 N 1.30673 * 119.99426 * 359.97438 * 10 8 6 12 12 Si 1.86793 * 120.00403 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47324 * 59.99582 * 12 10 8 14 14 H 1.48496 * 109.47327 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47140 * 299.99844 * 12 10 8 16 16 C 1.47152 * 118.05397 * 50.51241 * 5 4 2 17 17 H 1.08994 * 109.68314 * 69.19138 * 16 5 4 18 18 C 1.53008 * 109.70862 * 189.72406 * 16 5 4 19 19 C 1.53293 * 108.38557 * 309.46174 * 16 5 4 20 20 O 1.42959 * 109.22380 * 52.30781 * 19 16 5 21 21 H 1.09004 * 109.46580 * 300.00007 * 1 2 3 22 22 H 1.08994 * 109.47260 * 59.99996 * 1 2 3 23 23 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.68281 * 307.45131 * 4 2 1 25 25 H 1.09007 * 109.67909 * 67.99934 * 4 2 1 26 26 H 0.97007 * 119.99879 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.46757 * 170.81405 * 18 16 5 28 28 H 1.08996 * 109.46807 * 290.81497 * 18 16 5 29 29 H 1.08995 * 109.47165 * 50.81687 * 18 16 5 30 30 H 1.09000 * 109.52020 * 292.38103 * 19 16 5 31 31 H 1.09003 * 109.51297 * 172.23185 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2500 5 7 3.5023 -0.8751 -1.1327 6 6 4.3205 -0.5027 -2.1367 7 8 5.5140 -0.7290 -2.0648 8 6 3.7736 0.1740 -3.3139 9 1 2.7424 0.4949 -3.3217 10 6 4.5874 0.4051 -4.4299 11 7 5.8352 0.0171 -4.4202 12 14 3.8893 1.2680 -5.9323 13 1 3.4129 2.6214 -5.5492 14 1 4.9461 1.3906 -6.9684 15 1 2.7540 0.4785 -6.4736 16 6 4.0416 -1.4441 0.1126 17 1 3.7773 -2.4994 0.1787 18 6 5.5639 -1.2919 0.1326 19 6 3.4312 -0.6839 1.2956 20 8 2.0076 -0.6758 1.1658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.5764 -1.7077 -1.3210 25 1 1.8022 -0.1395 -2.1378 26 1 6.3991 0.1775 -5.1930 27 1 5.9432 -1.5627 1.1180 28 1 6.0044 -1.9470 -0.6189 29 1 5.8286 -0.2576 -0.0869 30 1 3.8022 0.3410 1.3004 31 1 3.7090 -1.1767 2.2274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035787720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:17 Heat of formation + Delta-G solvation = -72.046804 kcal Electronic energy + Delta-G solvation = -15060.896111 eV Core-core repulsion = 12535.907245 eV Total energy + Delta-G solvation = -2524.988866 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31883 -36.85268 -33.59133 -33.10412 -32.31173 -29.89824 -26.22480 -25.59516 -24.98249 -21.83284 -20.80637 -18.86175 -16.56576 -16.12485 -15.58796 -15.19881 -14.52617 -14.29335 -13.99870 -13.68897 -12.70264 -12.42014 -12.20686 -11.80226 -11.64825 -11.26327 -11.20857 -11.18423 -10.93318 -10.88035 -10.38313 -10.26996 -10.18086 -9.99045 -9.44500 -8.87304 -7.24393 -7.16419 -6.19219 -4.68647 3.12121 3.17541 3.18782 4.01091 4.11694 4.42853 4.52479 5.21049 5.42993 5.49262 5.55183 5.64997 5.75024 5.86101 5.87548 6.09318 6.16593 6.22131 6.26701 6.35470 6.45657 6.54143 6.98794 7.31293 7.40416 7.53259 7.61302 8.09366 8.30345 8.98114 9.38812 10.53434 10.71768 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033546 B = 0.011297 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.485177 B = 2477.871831 C = 3210.190687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.058 0.942 4 C 0.096 3.904 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.567 6.567 8 C -0.547 4.547 9 H 0.070 0.930 10 C 0.089 3.911 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.268 1.268 16 C 0.117 3.883 17 H 0.053 0.947 18 C -0.123 4.123 19 C 0.054 3.946 20 O -0.388 6.388 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.269 0.731 27 H 0.022 0.978 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 0.363 5.978 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 H 0.076 0.924 4 C -0.029 4.029 5 N -0.383 5.383 6 C 0.367 3.633 7 O -0.449 6.449 8 C -0.583 4.583 9 H 0.088 0.912 10 C -0.131 4.131 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.192 1.192 16 C 0.013 3.987 17 H 0.071 0.929 18 C -0.180 4.180 19 C -0.024 4.024 20 O -0.308 6.308 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.839 0.137 6.030 9.119 hybrid contribution -0.297 0.522 -0.904 1.085 sum -7.136 0.659 5.127 8.811 Atomic orbital electron populations 1.21705 0.93301 1.02623 1.02128 1.22557 0.94502 0.95665 0.86257 0.92369 1.22133 0.82860 0.99762 0.98123 1.48388 1.05213 1.68304 1.16369 1.18183 0.85251 0.78469 0.81366 1.90606 1.15552 1.59700 1.79077 1.20940 0.98171 1.40061 0.99153 0.91154 1.25696 0.94251 0.93936 0.99191 1.69985 1.05580 1.35378 1.28745 0.86458 0.79248 0.80324 0.80908 1.19252 1.20525 1.19244 1.21524 0.95572 0.96091 0.85539 0.92920 1.21987 0.92749 1.04699 0.98587 1.23060 0.80822 1.00059 0.98424 1.87823 1.21341 1.77848 1.43740 0.92257 0.90971 0.91979 0.93226 0.88198 0.91993 0.95953 0.89979 0.91644 0.93254 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.57 37.16 0.36 -1.46 16 2 C 0.07 1.16 3.40 -26.58 -0.09 1.07 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.10 1.86 5.85 -3.47 -0.02 1.84 16 5 N -0.64 -15.00 3.02 -166.30 -0.50 -15.50 16 6 C 0.56 15.75 7.38 -12.99 -0.10 15.65 16 7 O -0.57 -17.46 10.85 5.19 0.06 -17.41 16 8 C -0.55 -15.11 8.85 -35.63 -0.32 -15.43 16 9 H 0.07 1.77 5.75 -52.49 -0.30 1.47 16 10 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 11 N -0.77 -22.57 11.86 55.55 0.66 -21.91 16 12 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 16 C 0.12 2.41 3.68 -67.42 -0.25 2.16 16 17 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -2.62 7.64 37.16 0.28 -2.33 16 19 C 0.05 0.94 6.28 37.31 0.23 1.18 16 20 O -0.39 -6.91 10.38 -35.23 -0.37 -7.28 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 1.96 5.42 -51.93 -0.28 1.68 16 26 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 27 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.08 1.98 6.64 -51.93 -0.34 1.64 16 29 H 0.06 1.56 6.96 -51.93 -0.36 1.20 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 251.47 15.07 3.79 3.79 Total: -1.00 -32.11 251.47 -5.61 -37.72 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.23 Total: 0.79 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 0.01 Total: 5.03 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.16 Total: -37.41 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.31 Total: -24.68 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.11 -5.61 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.327 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds