Wall clock time and date at job start Sun Mar 29 2020 21:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.51361 * 2 1 4 4 C 1.53296 * 109.51161 * 239.89451 * 2 1 3 5 5 N 1.47264 * 108.32778 * 187.76531 * 4 2 1 6 6 C 1.34766 * 120.95937 * 230.49082 * 5 4 2 7 7 O 1.21693 * 120.00188 * 185.68532 * 6 5 4 8 8 C 1.46375 * 120.00517 * 5.68216 * 6 5 4 9 9 H 1.08001 * 119.99480 * 8.30364 * 8 6 5 10 10 C 1.40045 * 120.00697 * 188.30977 * 8 6 5 11 11 N 1.30673 * 119.99426 * 359.97438 * 10 8 6 12 12 Si 1.86793 * 120.00403 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47324 * 59.99582 * 12 10 8 14 14 H 1.48496 * 109.47327 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47140 * 299.99844 * 12 10 8 16 16 C 1.47152 * 118.05397 * 50.51241 * 5 4 2 17 17 H 1.08994 * 109.68314 * 69.19138 * 16 5 4 18 18 C 1.53008 * 109.70862 * 189.72406 * 16 5 4 19 19 C 1.53293 * 108.38557 * 309.46174 * 16 5 4 20 20 O 1.42959 * 109.22380 * 52.30781 * 19 16 5 21 21 H 1.09004 * 109.46580 * 300.00007 * 1 2 3 22 22 H 1.08994 * 109.47260 * 59.99996 * 1 2 3 23 23 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.68281 * 307.45131 * 4 2 1 25 25 H 1.09007 * 109.67909 * 67.99934 * 4 2 1 26 26 H 0.97007 * 119.99879 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.46757 * 170.81405 * 18 16 5 28 28 H 1.08996 * 109.46807 * 290.81497 * 18 16 5 29 29 H 1.08995 * 109.47165 * 50.81687 * 18 16 5 30 30 H 1.09000 * 109.52020 * 292.38103 * 19 16 5 31 31 H 1.09003 * 109.51297 * 172.23185 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2500 5 7 3.5023 -0.8751 -1.1327 6 6 4.3205 -0.5027 -2.1367 7 8 5.5140 -0.7290 -2.0648 8 6 3.7736 0.1740 -3.3139 9 1 2.7424 0.4949 -3.3217 10 6 4.5874 0.4051 -4.4299 11 7 5.8352 0.0171 -4.4202 12 14 3.8893 1.2680 -5.9323 13 1 3.4129 2.6214 -5.5492 14 1 4.9461 1.3906 -6.9684 15 1 2.7540 0.4785 -6.4736 16 6 4.0416 -1.4441 0.1126 17 1 3.7773 -2.4994 0.1787 18 6 5.5639 -1.2919 0.1326 19 6 3.4312 -0.6839 1.2956 20 8 2.0076 -0.6758 1.1658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.5764 -1.7077 -1.3210 25 1 1.8022 -0.1395 -2.1378 26 1 6.3991 0.1775 -5.1930 27 1 5.9432 -1.5627 1.1180 28 1 6.0044 -1.9470 -0.6189 29 1 5.8286 -0.2576 -0.0869 30 1 3.8022 0.3410 1.3004 31 1 3.7090 -1.1767 2.2274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035787720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:17 Heat of formation + Delta-G solvation = -94.962456 kcal Electronic energy + Delta-G solvation = -15061.889808 eV Core-core repulsion = 12535.907245 eV Total energy + Delta-G solvation = -2525.982563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95745 -38.67551 -35.42082 -34.76087 -34.21553 -31.43178 -28.25838 -27.18046 -26.45989 -23.55789 -22.29214 -20.71573 -18.48535 -17.69942 -17.36697 -16.87092 -16.15933 -15.90427 -15.63888 -15.34122 -14.55639 -13.85319 -13.79529 -13.35632 -13.09442 -13.04514 -12.91845 -12.78205 -12.62608 -12.42892 -12.09969 -11.97382 -11.90340 -11.56326 -11.01060 -10.86813 -9.33676 -8.99868 -8.24604 -6.83974 1.39068 1.42024 1.53299 2.21648 2.45878 2.62032 2.86043 3.57758 3.80299 4.03514 4.14382 4.16608 4.21347 4.39401 4.61139 4.64174 4.70630 4.82991 4.86754 4.96144 5.07325 5.21861 5.32813 5.36952 5.53009 5.70067 6.10128 6.20714 6.36327 6.87849 7.39334 8.47225 8.66729 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033546 B = 0.011297 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.485177 B = 2477.871831 C = 3210.190687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.091 3.909 5 N -0.651 5.651 6 C 0.542 3.458 7 O -0.609 6.609 8 C -0.573 4.573 9 H 0.090 0.910 10 C 0.032 3.968 11 N -0.822 5.822 12 Si 0.992 3.008 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.253 1.253 16 C 0.109 3.891 17 H 0.060 0.940 18 C -0.109 4.109 19 C 0.063 3.937 20 O -0.388 6.388 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.274 0.726 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 0.890 6.393 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.067 0.933 4 C -0.032 4.032 5 N -0.389 5.389 6 C 0.348 3.652 7 O -0.495 6.495 8 C -0.609 4.609 9 H 0.108 0.892 10 C -0.183 4.183 11 N -0.451 5.451 12 Si 0.812 3.188 13 H -0.179 1.179 14 H -0.201 1.201 15 H -0.177 1.177 16 C 0.005 3.995 17 H 0.078 0.922 18 C -0.166 4.166 19 C -0.014 4.014 20 O -0.307 6.307 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.186 0.654 6.488 11.265 hybrid contribution 0.430 0.299 -0.956 1.090 sum -8.755 0.953 5.532 10.400 Atomic orbital electron populations 1.21702 0.89888 1.03606 1.03755 1.22630 0.97020 0.94494 0.84591 0.93256 1.22347 0.80597 1.00666 0.99610 1.48312 1.06650 1.67520 1.16404 1.18581 0.85288 0.78681 0.82659 1.90585 1.17375 1.61226 1.80344 1.21467 0.99352 1.40455 0.99660 0.89218 1.26913 0.94301 0.94216 1.02884 1.70158 1.07591 1.37162 1.30216 0.85146 0.78639 0.79255 0.75781 1.17911 1.20091 1.17654 1.21762 0.95049 0.96944 0.85760 0.92198 1.21700 0.93668 1.01553 0.99661 1.23034 0.80633 0.99539 0.98229 1.87842 1.21176 1.77853 1.43839 0.90737 0.89289 0.91310 0.92226 0.88735 0.91650 0.91577 0.93788 0.95036 0.93925 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.57 71.98 0.69 -2.29 16 2 C 0.07 2.24 3.40 30.69 0.10 2.35 16 3 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.09 3.45 5.85 86.33 0.51 3.95 16 5 N -0.65 -30.58 3.02 -798.28 -2.41 -32.99 16 6 C 0.54 31.40 7.38 86.36 0.64 32.04 16 7 O -0.61 -39.46 10.85 -4.33 -0.05 -39.51 16 8 C -0.57 -32.13 8.85 24.83 0.22 -31.92 16 9 H 0.09 4.49 5.75 -2.91 -0.02 4.47 16 10 C 0.03 1.77 5.50 85.30 0.47 2.23 16 11 N -0.82 -49.86 11.86 21.83 0.26 -49.60 16 12 Si 0.99 40.47 29.56 68.60 2.03 42.50 16 13 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 14 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 15 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 16 C 0.11 4.41 3.68 44.97 0.17 4.58 16 17 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 18 C -0.11 -4.70 7.64 71.98 0.55 -4.15 16 19 C 0.06 2.07 6.28 72.08 0.45 2.52 16 20 O -0.39 -12.74 10.38 -148.98 -1.55 -14.29 16 21 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.09 3.63 5.42 -2.38 -0.01 3.62 16 26 H 0.27 15.14 8.29 -92.70 -0.77 14.37 16 27 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.04 2.21 6.64 -2.39 -0.02 2.20 16 29 H 0.03 1.54 6.96 -2.39 -0.02 1.53 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -72.28 251.47 3.19 -69.10 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.11 Total: 15.47 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 3.79 Total: 9.32 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -2.15 Total: -82.59 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -1.59 Total: -53.80 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -72.28 3.19 -69.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.866 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds