Wall clock time and date at job start Sun Mar 29 2020 21:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.51021 * 2 1 4 4 C 1.53291 * 109.51025 * 120.10077 * 2 1 3 5 5 N 1.47151 * 108.38490 * 172.27818 * 4 2 1 6 6 C 1.34776 * 120.98857 * 129.48346 * 5 4 2 7 7 O 1.21687 * 120.00508 * 175.25137 * 6 5 4 8 8 C 1.46378 * 119.99696 * 355.25288 * 6 5 4 9 9 H 1.08002 * 119.99960 * 7.78639 * 8 6 5 10 10 C 1.40051 * 120.00083 * 187.78049 * 8 6 5 11 11 N 1.30668 * 119.99737 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99933 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46961 * 60.00433 * 12 10 8 14 14 H 1.48497 * 109.46858 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47299 * 300.00347 * 12 10 8 16 16 C 1.47153 * 118.03402 * 309.46394 * 5 4 2 17 17 H 1.08999 * 109.68459 * 170.25417 * 16 5 4 18 18 C 1.52998 * 109.68442 * 290.77490 * 16 5 4 19 19 C 1.53304 * 108.38609 * 50.53534 * 16 5 4 20 20 O 1.42955 * 109.55233 * 239.87235 * 2 1 3 21 21 H 1.09003 * 109.46726 * 299.90004 * 1 2 3 22 22 H 1.08995 * 109.46889 * 59.89830 * 1 2 3 23 23 H 1.08991 * 109.46891 * 179.90086 * 1 2 3 24 24 H 1.08999 * 109.68779 * 52.55435 * 4 2 1 25 25 H 1.09004 * 109.68517 * 291.99536 * 4 2 1 26 26 H 0.97000 * 119.99803 * 179.97438 * 11 10 8 27 27 H 1.09001 * 109.47262 * 59.47775 * 18 16 5 28 28 H 1.09001 * 109.47541 * 179.47979 * 18 16 5 29 29 H 1.09002 * 109.47104 * 299.47899 * 18 16 5 30 30 H 1.09002 * 109.51154 * 67.61918 * 19 16 5 31 31 H 1.09000 * 109.51409 * 187.77557 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8746 1.1346 6 6 4.3188 -0.5018 2.1392 7 8 5.5147 -0.7129 2.0607 8 6 3.7681 0.1569 3.3247 9 1 2.6984 0.2318 3.4529 10 6 4.6284 0.6899 4.2928 11 7 5.9227 0.5996 4.1374 12 14 3.9256 1.5311 5.8053 13 1 3.0866 0.5679 6.5624 14 1 5.0366 2.0058 6.6688 15 1 3.0951 2.6888 5.3869 16 6 4.0418 -1.4440 -0.1100 17 1 5.1262 -1.3350 -0.1231 18 6 3.6717 -2.9257 -0.2022 19 6 3.4323 -0.6843 -1.2939 20 8 2.0085 -0.6762 -1.1651 21 1 -0.3633 0.5123 0.8909 22 1 -0.3633 0.5154 -0.8890 23 1 -0.3633 -1.0276 -0.0018 24 1 1.5765 -1.7077 1.3211 25 1 1.8023 -0.1393 2.1378 26 1 6.5186 0.9691 4.8078 27 1 2.5868 -3.0308 -0.1888 28 1 4.0656 -3.3417 -1.1295 29 1 4.0989 -3.4603 0.6462 30 1 3.8033 0.3406 -1.2986 31 1 3.7109 -1.1774 -2.2252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035787724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:19 Heat of formation + Delta-G solvation = -84.413458 kcal Electronic energy + Delta-G solvation = -15009.881205 eV Core-core repulsion = 12484.356081 eV Total energy + Delta-G solvation = -2525.525124 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31421 -36.67312 -33.73191 -32.95597 -32.40805 -29.71589 -26.26529 -25.84001 -25.34449 -21.99269 -20.58398 -18.49130 -16.75332 -16.00396 -15.96619 -14.87357 -14.68506 -14.29044 -14.05911 -13.29507 -12.84234 -12.56105 -12.18216 -11.86334 -11.81241 -11.57390 -11.45281 -11.07830 -10.96284 -10.90751 -10.61902 -10.29007 -10.10273 -9.87238 -9.33151 -8.88166 -7.61928 -7.21221 -6.24010 -4.68977 3.12452 3.17628 3.19136 4.01094 4.12843 4.44954 4.51773 5.22834 5.40318 5.48020 5.55741 5.57867 5.78648 5.86658 5.91299 6.00588 6.08100 6.15741 6.22020 6.29163 6.35202 6.52235 6.60089 6.78505 7.40732 7.53772 7.61537 8.08204 8.30754 8.97755 9.38567 10.53122 10.71371 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.010640 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.310089 B = 2631.053648 C = 3181.487457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.059 0.941 4 C 0.096 3.904 5 N -0.640 5.640 6 C 0.561 3.439 7 O -0.577 6.577 8 C -0.545 4.545 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.769 5.769 12 Si 0.907 3.093 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.108 3.892 17 H 0.096 0.904 18 C -0.149 4.149 19 C 0.057 3.943 20 O -0.385 6.385 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.270 0.730 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 -0.766 -6.066 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.029 4.029 5 N -0.378 5.378 6 C 0.367 3.633 7 O -0.459 6.459 8 C -0.582 4.582 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.732 3.268 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.192 1.192 16 C 0.003 3.997 17 H 0.114 0.886 18 C -0.208 4.208 19 C -0.020 4.020 20 O -0.304 6.304 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.790 -0.922 -6.142 9.963 hybrid contribution -0.205 0.517 0.917 1.072 sum -7.995 -0.405 -5.225 9.560 Atomic orbital electron populations 1.21702 0.93363 1.02552 1.02113 1.22541 0.94421 0.95697 0.86261 0.92344 1.22090 0.83049 0.99611 0.98161 1.48348 1.05204 1.67897 1.16385 1.18260 0.85140 0.77973 0.81881 1.90588 1.15550 1.59323 1.80457 1.20913 0.93662 1.39246 1.04375 0.90998 1.25722 0.94416 0.94511 0.98526 1.69993 1.02990 1.34226 1.32509 0.86441 0.79172 0.79991 0.81239 1.19189 1.20508 1.19231 1.21403 1.00143 0.92429 0.85736 0.88595 1.21984 1.01505 0.96444 1.00872 1.22937 0.81127 0.99726 0.98238 1.87815 1.21164 1.77750 1.43720 0.91007 0.92273 0.92040 0.93286 0.88325 0.91966 0.92695 0.92975 0.92720 0.93323 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.57 37.16 0.36 -1.44 16 2 C 0.07 1.16 3.40 -26.58 -0.09 1.07 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.10 1.84 5.45 -3.54 -0.02 1.82 16 5 N -0.64 -14.87 2.71 -166.39 -0.45 -15.33 16 6 C 0.56 16.08 7.62 -12.99 -0.10 15.99 16 7 O -0.58 -18.72 14.56 5.20 0.08 -18.65 16 8 C -0.55 -15.23 8.86 -35.63 -0.32 -15.55 16 9 H 0.07 1.82 5.73 -52.49 -0.30 1.52 16 10 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 11 N -0.77 -22.93 11.86 55.55 0.66 -22.27 16 12 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 C 0.11 2.18 3.21 -67.42 -0.22 1.97 16 17 H 0.10 2.15 7.12 -51.93 -0.37 1.78 16 18 C -0.15 -2.64 9.25 37.16 0.34 -2.30 16 19 C 0.06 0.98 6.36 37.31 0.24 1.22 16 20 O -0.39 -6.69 10.02 -35.23 -0.35 -7.05 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.90 7.65 -51.93 -0.40 0.50 16 25 H 0.10 1.94 5.41 -51.93 -0.28 1.66 16 26 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 27 H 0.05 0.94 7.22 -51.93 -0.37 0.57 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 255.79 15.07 3.85 3.85 Total: -1.00 -33.35 255.79 -5.38 -38.73 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.24 Total: 0.71 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 0.10 Total: 5.12 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.21 Total: -37.60 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.28 Total: -25.69 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.35 -5.38 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.682 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds