Wall clock time and date at job start Sun Mar 29 2020 21:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.51021 * 2 1 4 4 C 1.53291 * 109.51025 * 120.10077 * 2 1 3 5 5 N 1.47151 * 108.38490 * 172.27818 * 4 2 1 6 6 C 1.34776 * 120.98857 * 129.48346 * 5 4 2 7 7 O 1.21687 * 120.00508 * 175.25137 * 6 5 4 8 8 C 1.46378 * 119.99696 * 355.25288 * 6 5 4 9 9 H 1.08002 * 119.99960 * 7.78639 * 8 6 5 10 10 C 1.40051 * 120.00083 * 187.78049 * 8 6 5 11 11 N 1.30668 * 119.99737 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 119.99933 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46961 * 60.00433 * 12 10 8 14 14 H 1.48497 * 109.46858 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47299 * 300.00347 * 12 10 8 16 16 C 1.47153 * 118.03402 * 309.46394 * 5 4 2 17 17 H 1.08999 * 109.68459 * 170.25417 * 16 5 4 18 18 C 1.52998 * 109.68442 * 290.77490 * 16 5 4 19 19 C 1.53304 * 108.38609 * 50.53534 * 16 5 4 20 20 O 1.42955 * 109.55233 * 239.87235 * 2 1 3 21 21 H 1.09003 * 109.46726 * 299.90004 * 1 2 3 22 22 H 1.08995 * 109.46889 * 59.89830 * 1 2 3 23 23 H 1.08991 * 109.46891 * 179.90086 * 1 2 3 24 24 H 1.08999 * 109.68779 * 52.55435 * 4 2 1 25 25 H 1.09004 * 109.68517 * 291.99536 * 4 2 1 26 26 H 0.97000 * 119.99803 * 179.97438 * 11 10 8 27 27 H 1.09001 * 109.47262 * 59.47775 * 18 16 5 28 28 H 1.09001 * 109.47541 * 179.47979 * 18 16 5 29 29 H 1.09002 * 109.47104 * 299.47899 * 18 16 5 30 30 H 1.09002 * 109.51154 * 67.61918 * 19 16 5 31 31 H 1.09000 * 109.51409 * 187.77557 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8746 1.1346 6 6 4.3188 -0.5018 2.1392 7 8 5.5147 -0.7129 2.0607 8 6 3.7681 0.1569 3.3247 9 1 2.6984 0.2318 3.4529 10 6 4.6284 0.6899 4.2928 11 7 5.9227 0.5996 4.1374 12 14 3.9256 1.5311 5.8053 13 1 3.0866 0.5679 6.5624 14 1 5.0366 2.0058 6.6688 15 1 3.0951 2.6888 5.3869 16 6 4.0418 -1.4440 -0.1100 17 1 5.1262 -1.3350 -0.1231 18 6 3.6717 -2.9257 -0.2022 19 6 3.4323 -0.6843 -1.2939 20 8 2.0085 -0.6762 -1.1651 21 1 -0.3633 0.5123 0.8909 22 1 -0.3633 0.5154 -0.8890 23 1 -0.3633 -1.0276 -0.0018 24 1 1.5765 -1.7077 1.3211 25 1 1.8023 -0.1393 2.1378 26 1 6.5186 0.9691 4.8078 27 1 2.5868 -3.0308 -0.1888 28 1 4.0656 -3.3417 -1.1295 29 1 4.0989 -3.4603 0.6462 30 1 3.8033 0.3406 -1.2986 31 1 3.7109 -1.1774 -2.2252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035787724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:19 Heat of formation + Delta-G solvation = -108.505580 kcal Electronic energy + Delta-G solvation = -15010.925918 eV Core-core repulsion = 12484.356081 eV Total energy + Delta-G solvation = -2526.569837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91909 -38.60531 -35.50302 -34.67629 -34.26640 -31.24192 -28.32375 -27.23560 -26.89369 -23.57306 -22.26217 -20.21833 -18.64410 -17.96294 -17.42150 -16.62789 -16.28521 -15.83052 -15.66904 -15.04314 -14.58286 -14.25079 -13.62539 -13.38694 -13.21784 -13.09959 -13.02537 -12.75716 -12.57894 -12.48167 -12.08428 -12.05037 -11.97145 -11.36386 -10.96145 -10.86130 -9.81068 -9.06522 -8.32224 -6.87606 1.38467 1.41976 1.53635 2.20735 2.42843 2.61808 2.87722 3.54370 3.82782 3.99031 4.15005 4.18743 4.25259 4.44093 4.58252 4.67308 4.68738 4.79397 4.88966 4.95028 5.04414 5.08805 5.26832 5.33371 5.36874 5.70053 6.07925 6.21610 6.34789 6.84440 7.36341 8.41988 8.63679 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.010640 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.310089 B = 2631.053648 C = 3181.487457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.047 0.953 4 C 0.092 3.908 5 N -0.645 5.645 6 C 0.542 3.458 7 O -0.632 6.632 8 C -0.571 4.571 9 H 0.094 0.906 10 C 0.029 3.971 11 N -0.824 5.824 12 Si 0.996 3.004 13 H -0.254 1.254 14 H -0.276 1.276 15 H -0.251 1.251 16 C 0.097 3.903 17 H 0.063 0.937 18 C -0.137 4.137 19 C 0.066 3.934 20 O -0.381 6.381 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.275 0.725 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.179 -0.435 -6.247 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 H 0.065 0.935 4 C -0.031 4.031 5 N -0.381 5.381 6 C 0.348 3.652 7 O -0.519 6.519 8 C -0.607 4.607 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.453 5.453 12 Si 0.815 3.185 13 H -0.178 1.178 14 H -0.200 1.200 15 H -0.174 1.174 16 C -0.007 4.007 17 H 0.081 0.919 18 C -0.196 4.196 19 C -0.011 4.011 20 O -0.300 6.300 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.480 -0.607 -6.372 12.280 hybrid contribution 0.618 0.365 0.897 1.149 sum -9.863 -0.242 -5.474 11.283 Atomic orbital electron populations 1.21694 0.89844 1.03645 1.03695 1.22612 0.96995 0.94420 0.84694 0.93540 1.22309 0.80591 1.00658 0.99588 1.48231 1.06654 1.67021 1.16243 1.18697 0.85011 0.78084 0.83400 1.90532 1.17926 1.61541 1.81925 1.21457 0.95057 1.39375 1.04779 0.88775 1.27011 0.94496 0.94725 1.02372 1.70177 1.05143 1.35718 1.34295 0.85093 0.78495 0.79042 0.75861 1.17754 1.20037 1.17427 1.21649 0.98588 0.94689 0.85799 0.91919 1.21877 1.01974 0.94126 1.01596 1.22918 0.81025 0.99041 0.98147 1.87837 1.20803 1.77674 1.43714 0.89403 0.90779 0.91174 0.91946 0.88947 0.91556 0.91727 0.89604 0.95130 0.94411 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.57 71.98 0.69 -2.23 16 2 C 0.07 2.24 3.40 30.69 0.10 2.34 16 3 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.09 3.44 5.45 86.35 0.47 3.91 16 5 N -0.64 -30.44 2.71 -798.56 -2.17 -32.60 16 6 C 0.54 32.20 7.62 86.36 0.66 32.85 16 7 O -0.63 -43.32 14.56 -4.31 -0.06 -43.38 16 8 C -0.57 -32.36 8.86 24.83 0.22 -32.14 16 9 H 0.09 4.72 5.73 -2.91 -0.02 4.70 16 10 C 0.03 1.62 5.50 85.31 0.47 2.09 16 11 N -0.82 -50.83 11.86 21.84 0.26 -50.57 16 12 Si 1.00 40.60 29.56 68.60 2.03 42.63 16 13 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 14 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 15 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 16 C 0.10 3.96 3.21 44.97 0.14 4.10 16 17 H 0.06 2.96 7.12 -2.39 -0.02 2.94 16 18 C -0.14 -4.70 9.25 71.98 0.67 -4.04 16 19 C 0.07 2.17 6.36 72.08 0.46 2.63 16 20 O -0.38 -12.24 10.02 -148.98 -1.49 -13.73 16 21 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 2.17 7.65 -2.39 -0.02 2.15 16 25 H 0.09 3.55 5.41 -2.38 -0.01 3.53 16 26 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 27 H 0.06 2.07 7.22 -2.39 -0.02 2.06 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -75.55 255.79 3.56 -71.99 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.11 Total: 16.15 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 3.88 Total: 9.52 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.91 Total: -83.17 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -1.56 Total: -57.11 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -75.55 3.56 -71.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035787724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.516 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds