Wall clock time and date at job start Sun Mar 29 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99859 * 2 1 4 4 C 1.53045 * 109.45598 * 149.99986 * 3 2 1 5 5 C 1.53195 * 109.31159 * 181.38421 * 4 3 2 6 6 N 1.46926 * 108.89290 * 305.29768 * 5 4 3 7 7 C 1.34780 * 120.62785 * 233.68042 * 6 5 4 8 8 O 1.21687 * 119.99972 * 354.72668 * 7 6 5 9 9 C 1.46370 * 120.00021 * 174.72542 * 7 6 5 10 10 H 1.08000 * 119.99819 * 5.77651 * 9 7 6 11 11 C 1.40044 * 120.00272 * 185.76858 * 9 7 6 12 12 N 1.30676 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00455 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46777 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47172 * 119.99983 * 13 11 9 16 16 H 1.48499 * 109.47118 * 240.00402 * 13 11 9 17 17 C 1.47205 * 118.55609 * 53.53450 * 6 5 4 18 18 C 1.53038 * 109.46147 * 270.06581 * 3 2 1 19 19 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47151 * 300.00060 * 1 2 3 21 21 H 1.09003 * 109.47109 * 59.99885 * 1 2 3 22 22 H 1.08997 * 109.45049 * 30.03584 * 3 2 1 23 23 H 1.09000 * 109.49916 * 61.43398 * 4 3 2 24 24 H 1.08996 * 109.52616 * 301.35310 * 4 3 2 25 25 H 1.09004 * 109.58409 * 65.15166 * 5 4 3 26 26 H 1.08998 * 109.58330 * 185.43566 * 5 4 3 27 27 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.53145 * 186.67196 * 17 6 5 29 29 H 1.08998 * 109.67177 * 66.37480 * 17 6 5 30 30 H 1.09002 * 109.49574 * 298.56878 * 18 3 2 31 31 H 1.09000 * 109.49638 * 58.63278 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3592 1.2629 0.7215 5 6 3.9632 2.6705 0.7499 6 7 4.0329 3.1860 -0.6241 7 6 5.1957 3.6465 -1.1266 8 8 6.1775 3.7276 -0.4123 9 6 5.2775 4.0491 -2.5315 10 1 4.3862 4.0661 -3.1411 11 6 6.5115 4.4126 -3.0851 12 7 7.5900 4.3918 -2.3475 13 14 6.6158 4.9271 -4.8778 14 1 5.2639 4.8671 -5.4894 15 1 7.1369 6.3149 -4.9650 16 1 7.5293 4.0087 -5.6040 17 6 2.8070 3.1852 -1.4391 18 6 2.2161 1.7719 -1.4429 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.3450 1.9989 0.5144 23 1 4.0332 0.5884 0.1934 24 1 3.2155 0.9080 1.7420 25 1 3.3356 3.3252 1.3545 26 1 4.9656 2.6294 1.1761 27 1 8.4448 4.6431 -2.7310 28 1 3.0476 3.4835 -2.4595 29 1 2.0843 3.8824 -1.0153 30 1 2.9008 1.0926 -1.9507 31 1 1.2582 1.7790 -1.9631 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037266814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:43 Heat of formation + Delta-G solvation = -86.443492 kcal Electronic energy + Delta-G solvation = -14641.502353 eV Core-core repulsion = 12115.889199 eV Total energy + Delta-G solvation = -2525.613153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.00221 -37.29090 -35.00134 -32.54274 -31.10769 -30.36339 -26.91406 -26.10951 -23.57151 -22.58886 -20.58308 -18.89979 -16.75788 -16.41191 -15.58806 -15.01293 -14.85486 -14.37058 -14.04265 -13.89766 -13.01889 -12.86824 -12.42503 -11.98125 -11.73101 -11.51903 -11.18867 -10.99445 -10.90170 -10.72683 -10.67490 -10.24428 -10.09682 -10.07459 -9.22903 -8.86941 -7.58522 -7.25425 -6.20526 -4.65119 3.12345 3.20518 3.24504 3.89604 4.08186 4.54152 4.57622 5.07512 5.17611 5.34542 5.38338 5.46366 5.61547 5.67442 5.69784 5.85032 5.98779 6.11767 6.19058 6.27597 6.47492 6.55237 6.57065 6.78816 7.37475 7.45557 7.60741 8.13081 8.34592 9.01734 9.42336 10.56839 10.75368 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047768 B = 0.008142 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.022904 B = 3438.037269 C = 3848.603537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.093 3.907 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.644 5.644 7 C 0.560 3.440 8 O -0.577 6.577 9 C -0.544 4.544 10 H 0.073 0.927 11 C 0.087 3.913 12 N -0.768 5.768 13 Si 0.906 3.094 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.124 3.876 18 C -0.154 4.154 19 H 0.080 0.920 20 H 0.037 0.963 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.268 0.732 28 H 0.097 0.903 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.167 -4.566 1.331 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C 0.035 3.965 4 C -0.166 4.166 5 C -0.001 4.001 6 N -0.382 5.382 7 C 0.366 3.634 8 O -0.460 6.460 9 C -0.581 4.581 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.397 5.397 13 Si 0.731 3.269 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.000 4.000 18 C -0.193 4.193 19 H 0.098 0.902 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.283 -4.639 1.743 12.323 hybrid contribution -0.352 0.375 -0.935 1.067 sum -11.635 -4.264 0.808 12.418 Atomic orbital electron populations 1.22716 0.81917 1.02125 0.99686 1.87918 1.18978 1.28840 1.95117 1.22179 0.94733 0.83477 0.96085 1.22024 0.95263 0.99310 1.00013 1.21101 1.01417 0.91353 0.86275 1.48293 1.09948 1.68012 1.11957 1.18258 0.79838 0.76799 0.88535 1.90589 1.35379 1.58972 1.61074 1.21008 0.94659 1.48043 0.94371 0.90855 1.25734 0.95266 0.93261 0.98972 1.70025 0.99049 1.34801 1.35823 0.86336 0.79055 0.78616 0.82888 1.18749 1.20136 1.20145 1.21418 0.86921 0.93596 0.98092 1.22450 1.01007 0.99215 0.96630 0.90151 0.94421 0.94249 0.92620 0.90990 0.91475 0.94030 0.89291 0.92124 0.88535 0.94062 0.90753 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.90 10.35 -35.23 -0.36 -6.27 16 3 C 0.09 1.44 2.57 -26.69 -0.07 1.37 16 4 C -0.13 -2.17 5.73 -26.61 -0.15 -2.32 16 5 C 0.12 2.45 6.41 -3.71 -0.02 2.43 16 6 N -0.64 -14.83 2.98 -174.21 -0.52 -15.35 16 7 C 0.56 16.07 7.62 -12.99 -0.10 15.98 16 8 O -0.58 -18.83 14.48 5.20 0.08 -18.75 16 9 C -0.54 -15.27 8.88 -35.64 -0.32 -15.59 16 10 H 0.07 1.87 5.66 -52.49 -0.30 1.57 16 11 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 12 N -0.77 -23.07 11.84 55.55 0.66 -22.41 16 13 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 14 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 C 0.12 2.33 6.36 -3.56 -0.02 2.31 16 18 C -0.15 -2.51 5.70 -26.62 -0.15 -2.66 16 19 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 21 H 0.04 0.40 7.84 -51.93 -0.41 -0.01 16 22 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.98 7.03 -51.93 -0.37 1.61 16 27 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 28 H 0.10 1.90 5.33 -51.93 -0.28 1.62 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 0.85 7.84 -51.93 -0.41 0.45 16 LS Contribution 256.83 15.07 3.87 3.87 Total: -1.00 -33.73 256.83 -5.39 -39.12 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.25 Total: -0.52 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 0.16 Total: 5.29 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.14 Total: -37.77 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.29 Total: -25.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.73 -5.39 -39.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037266814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.322 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds