Wall clock time and date at job start Sun Mar 29 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99859 * 2 1 4 4 C 1.53045 * 109.45598 * 149.99986 * 3 2 1 5 5 C 1.53195 * 109.31159 * 181.38421 * 4 3 2 6 6 N 1.46926 * 108.89290 * 305.29768 * 5 4 3 7 7 C 1.34780 * 120.62785 * 233.68042 * 6 5 4 8 8 O 1.21687 * 119.99972 * 354.72668 * 7 6 5 9 9 C 1.46370 * 120.00021 * 174.72542 * 7 6 5 10 10 H 1.08000 * 119.99819 * 5.77651 * 9 7 6 11 11 C 1.40044 * 120.00272 * 185.76858 * 9 7 6 12 12 N 1.30676 * 119.99928 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00455 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46777 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47172 * 119.99983 * 13 11 9 16 16 H 1.48499 * 109.47118 * 240.00402 * 13 11 9 17 17 C 1.47205 * 118.55609 * 53.53450 * 6 5 4 18 18 C 1.53038 * 109.46147 * 270.06581 * 3 2 1 19 19 H 1.08997 * 109.47052 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47151 * 300.00060 * 1 2 3 21 21 H 1.09003 * 109.47109 * 59.99885 * 1 2 3 22 22 H 1.08997 * 109.45049 * 30.03584 * 3 2 1 23 23 H 1.09000 * 109.49916 * 61.43398 * 4 3 2 24 24 H 1.08996 * 109.52616 * 301.35310 * 4 3 2 25 25 H 1.09004 * 109.58409 * 65.15166 * 5 4 3 26 26 H 1.08998 * 109.58330 * 185.43566 * 5 4 3 27 27 H 0.97000 * 120.00154 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.53145 * 186.67196 * 17 6 5 29 29 H 1.08998 * 109.67177 * 66.37480 * 17 6 5 30 30 H 1.09002 * 109.49574 * 298.56878 * 18 3 2 31 31 H 1.09000 * 109.49638 * 58.63278 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3592 1.2629 0.7215 5 6 3.9632 2.6705 0.7499 6 7 4.0329 3.1860 -0.6241 7 6 5.1957 3.6465 -1.1266 8 8 6.1775 3.7276 -0.4123 9 6 5.2775 4.0491 -2.5315 10 1 4.3862 4.0661 -3.1411 11 6 6.5115 4.4126 -3.0851 12 7 7.5900 4.3918 -2.3475 13 14 6.6158 4.9271 -4.8778 14 1 5.2639 4.8671 -5.4894 15 1 7.1369 6.3149 -4.9650 16 1 7.5293 4.0087 -5.6040 17 6 2.8070 3.1852 -1.4391 18 6 2.2161 1.7719 -1.4429 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.3450 1.9989 0.5144 23 1 4.0332 0.5884 0.1934 24 1 3.2155 0.9080 1.7420 25 1 3.3356 3.3252 1.3545 26 1 4.9656 2.6294 1.1761 27 1 8.4448 4.6431 -2.7310 28 1 3.0476 3.4835 -2.4595 29 1 2.0843 3.8824 -1.0153 30 1 2.9008 1.0926 -1.9507 31 1 1.2582 1.7790 -1.9631 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037266814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:43 Heat of formation + Delta-G solvation = -111.085040 kcal Electronic energy + Delta-G solvation = -14642.570890 eV Core-core repulsion = 12115.889199 eV Total energy + Delta-G solvation = -2526.681691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51554 -38.89825 -36.74290 -34.67046 -32.70251 -31.89113 -28.58905 -27.48126 -25.10437 -24.10455 -22.20610 -20.61732 -18.56871 -17.97119 -17.27378 -16.40602 -16.11031 -15.96546 -15.68844 -15.51580 -14.53338 -14.36676 -14.11829 -13.42095 -13.33074 -13.10703 -12.93680 -12.75528 -12.51468 -12.15765 -12.05057 -11.94575 -11.76307 -11.44866 -10.95015 -10.43146 -9.77847 -9.13354 -8.29589 -6.84076 1.39966 1.40226 1.58028 2.23655 2.44787 2.76913 2.88921 3.60830 3.79917 3.89763 4.16360 4.21318 4.38094 4.52406 4.57266 4.61637 4.69005 4.80790 4.90037 4.92669 4.95855 4.98465 5.14604 5.37708 5.40116 5.76275 6.14293 6.32438 6.39229 6.87894 7.40923 8.46056 8.67185 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047768 B = 0.008142 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.022904 B = 3438.037269 C = 3848.603537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.099 3.901 4 C -0.120 4.120 5 C 0.121 3.879 6 N -0.648 5.648 7 C 0.539 3.461 8 O -0.633 6.633 9 C -0.569 4.569 10 H 0.096 0.904 11 C 0.027 3.973 12 N -0.825 5.825 13 Si 0.996 3.004 14 H -0.244 1.244 15 H -0.269 1.269 16 H -0.270 1.270 17 C 0.120 3.880 18 C -0.146 4.146 19 H 0.096 0.904 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.274 0.726 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.903 -4.628 0.161 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.042 3.958 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.385 5.385 7 C 0.346 3.654 8 O -0.521 6.521 9 C -0.605 4.605 10 H 0.113 0.887 11 C -0.188 4.188 12 N -0.455 5.455 13 Si 0.816 3.184 14 H -0.166 1.166 15 H -0.194 1.194 16 H -0.195 1.195 17 C -0.003 4.003 18 C -0.184 4.184 19 H 0.115 0.885 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.102 -4.728 0.584 14.885 hybrid contribution 0.407 0.343 -0.483 0.718 sum -13.696 -4.385 0.101 14.381 Atomic orbital electron populations 1.22993 0.79531 1.03749 1.00969 1.87892 1.21558 1.28235 1.95198 1.22017 0.94068 0.84511 0.95217 1.21894 0.95883 0.96470 1.01567 1.21212 1.00401 0.93758 0.84900 1.48183 1.09932 1.66866 1.13488 1.18696 0.80728 0.76936 0.89073 1.90534 1.37882 1.61342 1.62336 1.21548 0.96022 1.48219 0.94694 0.88658 1.27024 0.94394 0.92487 1.04854 1.70202 1.00106 1.36213 1.38930 0.84991 0.79991 0.78190 0.75267 1.16631 1.19373 1.19489 1.21629 0.85608 0.96064 0.96979 1.22358 1.01739 0.96694 0.97655 0.88536 0.92897 0.93122 0.90150 0.93733 0.88993 0.91315 0.92793 0.91632 0.89732 0.91161 0.93314 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.65 16 2 O -0.41 -11.18 10.35 -148.98 -1.54 -12.72 16 3 C 0.10 2.80 2.57 30.62 0.08 2.88 16 4 C -0.12 -3.97 5.73 30.67 0.18 -3.79 16 5 C 0.12 4.84 6.41 86.36 0.55 5.40 16 6 N -0.65 -30.10 2.98 -823.29 -2.46 -32.56 16 7 C 0.54 32.06 7.62 86.36 0.66 32.72 16 8 O -0.63 -43.54 14.48 -4.31 -0.06 -43.60 16 9 C -0.57 -32.37 8.88 24.83 0.22 -32.15 16 10 H 0.10 4.81 5.66 -2.91 -0.02 4.80 16 11 C 0.03 1.52 5.50 85.30 0.47 1.99 16 12 N -0.82 -51.27 11.84 21.83 0.26 -51.01 16 13 Si 1.00 41.06 29.56 68.60 2.03 43.08 16 14 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 15 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 16 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 17 C 0.12 4.30 6.36 86.31 0.55 4.85 16 18 C -0.15 -4.40 5.70 30.67 0.17 -4.22 16 19 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.05 0.80 8.08 -2.38 -0.02 0.78 16 21 H 0.05 0.80 7.84 -2.39 -0.02 0.78 16 22 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 2.52 7.03 -2.39 -0.02 2.51 16 27 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 28 H 0.08 3.21 5.33 -2.39 -0.01 3.20 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 2.26 7.84 -2.39 -0.02 2.24 16 Total: -1.00 -76.79 256.83 3.44 -73.35 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.11 Total: 14.13 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.11 Total: 9.33 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.20 Total: -83.57 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -1.60 Total: -56.32 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -76.79 3.44 -73.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037266814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.737 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds