Wall clock time and date at job start Sun Mar 29 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00673 * 2 1 4 4 O 1.20824 * 119.99412 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00421 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.72469 * 56.90810 * 5 3 2 7 7 C 1.54933 * 110.66754 * 293.81064 * 5 3 2 8 8 C 1.54595 * 102.92386 * 204.14857 * 7 5 3 9 9 C 1.53992 * 105.13904 * 21.95788 * 8 7 5 10 10 N 1.47910 * 107.05668 * 1.22280 * 9 8 7 11 11 C 1.46898 * 111.00159 * 214.15324 * 10 9 8 12 12 C 1.50705 * 109.46966 * 64.30194 * 11 10 9 13 13 H 1.08001 * 119.99548 * 354.73608 * 12 11 10 14 14 C 1.37877 * 119.99767 * 174.72685 * 12 11 10 15 15 N 1.31509 * 120.00353 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99635 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46980 * 60.00485 * 16 14 12 18 18 H 1.48497 * 109.47052 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47347 * 300.00233 * 16 14 12 20 20 H 1.09004 * 109.46913 * 299.99795 * 1 2 3 21 21 H 1.09001 * 109.46809 * 59.99041 * 1 2 3 22 22 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 23 23 H 1.09001 * 110.72501 * 85.79577 * 7 5 3 24 24 H 1.09002 * 110.88084 * 322.58157 * 7 5 3 25 25 H 1.09005 * 110.30919 * 263.04588 * 8 7 5 26 26 H 1.08994 * 110.31125 * 140.87169 * 8 7 5 27 27 H 1.09000 * 109.91994 * 241.87306 * 9 8 7 28 28 H 1.08997 * 109.91917 * 120.57399 * 9 8 7 29 29 H 1.08999 * 109.46899 * 184.30224 * 11 10 9 30 30 H 1.09002 * 109.47396 * 304.30514 * 11 10 9 31 31 H 0.96998 * 120.00008 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9810 0.7388 -0.8533 7 6 4.1425 0.7191 1.3272 8 6 5.5161 1.4212 1.4284 9 6 5.3934 2.6747 0.5424 10 7 4.0172 2.6899 0.0005 11 6 3.9922 3.2504 -1.3571 12 6 4.7723 2.3549 -2.2848 13 1 5.3105 1.5059 -1.8898 14 6 4.7988 2.6193 -3.6377 15 7 4.1437 3.6533 -4.1186 16 14 5.7652 1.5088 -4.7876 17 1 5.2328 0.1251 -4.7029 18 1 5.6347 2.0054 -6.1810 19 1 7.1968 1.5134 -4.3931 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 4.2655 -0.3625 1.2713 24 1 3.5075 0.9906 2.1704 25 1 6.3036 0.7679 1.0525 26 1 5.7203 1.7061 2.4605 27 1 6.1135 2.6241 -0.2743 28 1 5.5673 3.5699 1.1394 29 1 2.9606 3.3207 -1.7021 30 1 4.4409 4.2437 -1.3485 31 1 4.1626 3.8395 -5.0703 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039116493.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:43 Heat of formation + Delta-G solvation = -80.435886 kcal Electronic energy + Delta-G solvation = -14856.801278 eV Core-core repulsion = 12331.448634 eV Total energy + Delta-G solvation = -2525.352644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99016 -37.93062 -35.68606 -33.13105 -30.92590 -29.41024 -27.02435 -26.20513 -23.23368 -21.80908 -20.32897 -19.36154 -17.37737 -16.50742 -15.89332 -15.59709 -15.24967 -14.38543 -13.95518 -13.33150 -13.09910 -12.60848 -12.48708 -12.22003 -11.83825 -11.44417 -11.02999 -10.92189 -10.77480 -10.76970 -10.36615 -10.28406 -10.06068 -10.05175 -9.70623 -9.51703 -8.45929 -7.34507 -6.06447 -4.16912 2.91420 3.18096 3.25916 3.31528 3.32684 4.36368 5.00271 5.13572 5.16156 5.24141 5.37922 5.45341 5.52211 5.59721 5.81589 5.95305 6.00681 6.16519 6.26104 6.53415 6.59922 6.75239 6.88111 7.10300 7.50934 7.84929 7.90189 8.09875 8.22374 8.48943 8.93146 9.49560 10.99105 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.011477 C = 0.009632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.316475 B = 2439.123027 C = 2906.321688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.474 3.526 4 O -0.489 6.489 5 C 0.075 3.925 6 H 0.109 0.891 7 C -0.110 4.110 8 C -0.128 4.128 9 C 0.039 3.961 10 N -0.503 5.503 11 C 0.177 3.823 12 C -0.560 4.560 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 -7.684 8.676 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.315 3.685 4 O -0.373 6.373 5 C -0.035 4.035 6 H 0.126 0.874 7 C -0.148 4.148 8 C -0.166 4.166 9 C -0.089 4.089 10 N -0.228 5.228 11 C 0.051 3.949 12 C -0.599 4.599 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.889 -6.912 8.811 11.357 hybrid contribution 0.773 -0.914 -1.431 1.865 sum -1.116 -7.826 7.381 10.815 Atomic orbital electron populations 1.23125 0.77556 1.02811 1.02237 1.86497 1.22496 1.34500 1.84994 1.23699 0.91831 0.80844 0.72098 1.90613 1.66700 1.36237 1.43764 1.22317 0.86707 0.94531 0.99956 0.87375 1.22405 0.96749 0.99644 0.96010 1.22389 0.96636 0.97425 1.00131 1.22766 0.91678 0.96753 0.97753 1.64820 1.19117 1.12772 1.26123 1.19934 0.98252 0.95082 0.81645 1.21689 1.32267 1.12968 0.92934 0.92252 1.24971 0.95238 0.95155 0.98236 1.69947 1.41256 1.27253 1.13799 0.86701 0.80584 0.81025 0.80028 1.20120 1.21123 1.20119 0.92427 0.92162 0.88756 0.90716 0.91279 0.91609 0.91579 0.91769 0.91487 0.93955 0.95003 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.51 10.56 -39.25 -0.41 -6.92 16 3 C 0.47 9.91 7.19 36.00 0.26 10.17 16 4 O -0.49 -11.65 15.57 -18.75 -0.29 -11.94 16 5 C 0.07 1.52 2.57 -66.94 -0.17 1.35 16 6 H 0.11 2.37 5.85 -51.93 -0.30 2.06 16 7 C -0.11 -1.74 6.48 -24.87 -0.16 -1.90 16 8 C -0.13 -1.93 6.93 -25.38 -0.18 -2.11 16 9 C 0.04 0.73 6.35 -2.75 -0.02 0.72 16 10 N -0.50 -11.37 4.82 -225.42 -1.09 -12.46 16 11 C 0.18 4.74 5.00 -4.97 -0.02 4.71 16 12 C -0.56 -15.26 6.92 -34.44 -0.24 -15.50 16 13 H 0.06 1.55 6.04 -52.49 -0.32 1.23 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 15 N -0.88 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 21 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 1.05 8.05 -51.93 -0.42 0.64 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.33 6.53 -51.93 -0.34 0.99 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.04 1.28 7.54 -51.93 -0.39 0.89 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 259.99 15.07 3.92 3.92 Total: -1.00 -31.49 259.99 -6.01 -37.50 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.29 Total: -1.48 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 0.44 Total: 0.83 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.35 Total: -38.02 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.71 Total: -18.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.49 -6.01 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039116493.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.935 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds