Wall clock time and date at job start Sun Mar 29 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00029 * 2 1 4 4 H 1.48493 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46826 * 300.00389 * 3 2 1 6 6 H 1.48498 * 109.46986 * 60.00075 * 3 2 1 7 7 C 1.37880 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47729 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47538 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99996 * 189.99851 * 12 11 10 14 14 C 1.52998 * 109.47047 * 75.67114 * 13 12 11 15 15 O 1.42905 * 109.47096 * 64.32485 * 14 13 12 16 16 C 1.46903 * 110.99998 * 66.04172 * 12 11 10 17 17 C 1.53002 * 117.49678 * 260.07372 * 16 12 11 18 18 C 1.53000 * 60.00007 * 252.51317 * 17 16 12 19 19 H 0.97000 * 119.99942 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47497 * 60.00315 * 9 7 2 21 21 H 1.09004 * 109.47330 * 299.99994 * 9 7 2 22 22 H 1.09001 * 109.47262 * 59.99476 * 10 9 7 23 23 H 1.09008 * 109.47136 * 300.00237 * 10 9 7 24 24 H 1.09001 * 109.47311 * 59.99342 * 11 10 9 25 25 H 1.09004 * 109.46991 * 299.99757 * 11 10 9 26 26 H 1.08998 * 109.47267 * 315.67269 * 13 12 11 27 27 H 1.08997 * 109.46703 * 195.67184 * 13 12 11 28 28 H 1.08996 * 109.47519 * 304.33060 * 14 13 12 29 29 H 1.09003 * 109.47210 * 184.32229 * 14 13 12 30 30 H 0.96695 * 114.00106 * 175.27204 * 15 14 13 31 31 H 1.09000 * 115.55055 * 45.78453 * 16 12 11 32 32 H 1.08993 * 117.50028 * 0.02562 * 17 16 12 33 33 H 1.08998 * 117.49397 * 145.02276 * 17 16 12 34 34 H 1.08997 * 117.50134 * 252.51659 * 18 17 16 35 35 H 1.09002 * 117.52008 * 107.48059 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4349 -6.1037 -0.0006 13 6 1.7506 -7.3814 -0.2393 14 6 1.3862 -7.4958 -1.7208 15 8 2.5812 -7.5394 -2.5033 16 6 3.1994 -6.1420 1.2533 17 6 4.6121 -5.5547 1.2375 18 6 4.4145 -7.0700 1.3117 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8720 -3.6043 0.8894 23 1 2.8720 -3.6043 -0.8906 24 1 0.8539 -5.0446 -0.8913 25 1 0.8534 -5.0451 0.8886 26 1 0.8430 -7.4255 0.3626 27 1 2.4102 -8.2040 0.0372 28 1 0.7900 -6.6324 -2.0160 29 1 0.8114 -8.4074 -1.8843 30 1 2.4282 -7.6843 -3.4470 31 1 2.6140 -6.0214 2.1647 32 1 4.9741 -5.1395 0.2970 33 1 4.9562 -5.0473 2.1388 34 1 4.6285 -7.5596 2.2617 35 1 4.6463 -7.6524 0.4199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042479338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:41 Heat of formation + Delta-G solvation = -57.703337 kcal Electronic energy + Delta-G solvation = -14393.786348 eV Core-core repulsion = 12005.252556 eV Total energy + Delta-G solvation = -2388.533792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79313 -37.48995 -36.20748 -34.96391 -33.17293 -29.86706 -27.78928 -24.90803 -23.39351 -22.71598 -22.10834 -20.97432 -18.54735 -18.22794 -17.23993 -16.66825 -16.49090 -15.82777 -15.33377 -14.93328 -14.53175 -14.15448 -14.04679 -13.51318 -13.29979 -13.12093 -12.69229 -12.51364 -12.32602 -12.21493 -11.89886 -11.69645 -11.41072 -11.17268 -11.10247 -10.89257 -10.73495 -10.55459 -9.20878 -8.20735 -6.31474 1.39103 1.39553 1.53457 2.40579 2.83018 2.92901 3.12217 3.50739 4.06779 4.08720 4.13411 4.22425 4.25191 4.36711 4.50514 4.57813 4.72773 4.75713 4.78450 4.82739 5.00283 5.00956 5.11797 5.15666 5.25278 5.36457 5.53328 5.75513 5.86106 6.13057 6.26681 6.29854 6.85091 7.02916 7.37632 8.91576 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.006520 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.478538 B = 4293.680608 C = 4712.105012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.082 4.082 11 C 0.070 3.930 12 N -0.512 5.512 13 C 0.051 3.949 14 C 0.081 3.919 15 O -0.581 6.581 16 C -0.010 4.010 17 C -0.169 4.169 18 C -0.146 4.146 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.010 1.010 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.389 0.611 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -16.091 -0.167 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.058 4.058 12 N -0.236 5.236 13 C -0.076 4.076 14 C 0.003 3.997 15 O -0.388 6.388 16 C -0.119 4.119 17 C -0.207 4.207 18 C -0.184 4.184 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.131 -15.828 0.026 16.639 hybrid contribution -0.903 0.957 0.039 1.316 sum 4.228 -14.871 0.066 15.461 Atomic orbital electron populations 1.70101 1.07772 1.27716 1.51869 1.25984 0.95796 1.03340 0.94691 0.85397 0.79025 0.78707 0.77927 1.18749 1.20190 1.20135 1.21705 0.93438 0.92449 1.50327 0.92526 1.18971 0.94358 0.93140 0.94593 1.21295 0.97769 0.92687 1.00272 1.22050 0.93386 0.90660 0.99672 1.61748 1.26341 1.02973 1.32561 1.22223 0.98252 0.91732 0.95427 1.22238 0.86657 0.99991 0.90787 1.86544 1.32339 1.96176 1.23759 1.22429 0.90015 1.07846 0.91613 1.23001 0.98160 0.96665 1.02881 1.23036 0.99093 0.92537 1.03691 0.92732 0.99110 0.99144 0.93187 0.93914 0.91478 0.95671 0.92630 0.89505 0.94704 0.90758 0.76283 0.90053 0.89957 0.88130 0.86675 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.08 -3.68 5.01 30.59 0.15 -3.53 16 11 C 0.07 2.59 4.79 86.30 0.41 3.01 16 12 N -0.51 -16.22 4.50 -870.98 -3.92 -20.14 16 13 C 0.05 1.28 5.34 86.30 0.46 1.74 16 14 C 0.08 1.86 7.23 71.98 0.52 2.38 16 15 O -0.58 -14.50 13.60 -148.98 -2.03 -16.52 16 16 C -0.01 -0.30 4.23 44.92 0.19 -0.11 16 17 C -0.17 -4.78 9.48 30.59 0.29 -4.49 16 18 C -0.15 -3.40 9.67 30.59 0.30 -3.10 16 19 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 21 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 22 H 0.05 2.21 6.71 -2.39 -0.02 2.20 16 23 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.07 2.48 6.57 -2.39 -0.02 2.46 16 25 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 26 H 0.06 1.28 8.00 -2.39 -0.02 1.27 16 27 H 0.09 2.01 7.23 -2.39 -0.02 1.99 16 28 H 0.03 0.88 6.67 -2.39 -0.02 0.87 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.29 8.05 -2.39 -0.02 2.27 16 Total: -1.00 -69.15 289.18 -0.09 -69.24 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.37 Total: 11.73 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.17 Total: -33.96 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.63 Total: -77.93 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -2.03 Total: -16.52 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.15 -0.09 -69.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042479338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.539 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds