Wall clock time and date at job start Sun Mar 29 2020 21:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47037 * 2 1 4 4 C 1.50701 * 109.46858 * 120.00238 * 2 1 3 5 5 O 1.20829 * 120.00551 * 120.00104 * 4 2 1 6 6 O 1.34229 * 119.99889 * 299.99576 * 4 2 1 7 7 N 1.46896 * 109.47249 * 239.99789 * 2 1 3 8 8 C 1.46899 * 110.99926 * 60.00214 * 7 2 1 9 9 C 1.50691 * 109.47251 * 54.80970 * 8 7 2 10 10 H 1.08001 * 120.00000 * 5.18243 * 9 8 7 11 11 C 1.37875 * 120.00085 * 185.18440 * 9 8 7 12 12 N 1.31509 * 120.00161 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00074 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46952 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47494 * 119.99960 * 13 11 9 16 16 H 1.48503 * 109.46778 * 240.00198 * 13 11 9 17 17 C 1.46896 * 111.00340 * 183.95772 * 7 2 1 18 18 C 1.53006 * 117.49875 * 235.97883 * 17 7 2 19 19 C 1.52997 * 60.00016 * 252.50692 * 18 17 7 20 20 H 1.09003 * 109.47234 * 300.00308 * 1 2 3 21 21 H 1.09000 * 109.46732 * 60.00159 * 1 2 3 22 22 H 1.09003 * 109.47341 * 180.02562 * 1 2 3 23 23 H 0.96703 * 117.00207 * 180.02562 * 6 4 2 24 24 H 1.09005 * 109.47316 * 174.81269 * 8 7 2 25 25 H 1.09000 * 109.46948 * 294.81098 * 8 7 2 26 26 H 0.97008 * 120.00315 * 180.02562 * 12 11 9 27 27 H 1.08994 * 115.54907 * 21.68495 * 17 7 2 28 28 H 1.08995 * 117.49588 * 0.02562 * 18 17 7 29 29 H 1.09000 * 117.49524 * 145.01710 * 18 17 7 30 30 H 1.09003 * 117.50054 * 252.50929 * 19 18 17 31 31 H 1.09004 * 117.50155 * 107.48486 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7269 -1.6929 1.1197 6 8 1.7080 -0.2519 2.4496 7 7 2.0197 -0.6925 -1.1994 8 6 1.5487 -0.0264 -2.4210 9 6 1.9426 1.4277 -2.3841 10 1 2.5595 1.7997 -1.5794 11 6 1.5154 2.2831 -3.3774 12 7 0.7646 1.8299 -4.3575 13 14 2.0043 4.0855 -3.3320 14 1 2.8457 4.3401 -2.1352 15 1 2.7720 4.4213 -4.5580 16 1 0.7831 4.9280 -3.2663 17 6 3.4850 -0.7946 -1.1870 18 6 4.2433 -0.2222 -2.3863 19 6 4.1362 -1.7371 -2.2012 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.0540 -0.7406 3.2089 24 1 1.9995 -0.5030 -3.2916 25 1 0.4636 -0.1074 -2.4837 26 1 0.4644 2.4317 -5.0566 27 1 3.9540 -0.7084 -0.2069 28 1 3.6548 0.2306 -3.1842 29 1 5.2113 0.2410 -2.1952 30 1 5.0338 -2.2707 -1.8884 31 1 3.4772 -2.2815 -2.8776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415017.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:56 Heat of formation + Delta-G solvation = -71.358137 kcal Electronic energy + Delta-G solvation = -15005.751671 eV Core-core repulsion = 12480.792668 eV Total energy + Delta-G solvation = -2524.959003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.51116 -39.47207 -36.95775 -35.71001 -34.55902 -31.07745 -28.68575 -26.13475 -24.19519 -22.99170 -22.10135 -20.60950 -19.04691 -18.48040 -17.85089 -17.10377 -16.64922 -16.46924 -15.26847 -14.90339 -14.71329 -14.20246 -13.72596 -13.41589 -13.11576 -12.89295 -12.76892 -12.63963 -12.48362 -12.35312 -11.96579 -11.82832 -11.71687 -11.35128 -11.10620 -10.81875 -10.54089 -8.90111 -8.09779 -6.25783 1.26571 1.39667 1.43564 1.52741 2.08179 2.41763 3.00170 3.15196 3.43953 4.14829 4.22319 4.24638 4.30736 4.42009 4.48561 4.69521 4.89890 4.94746 5.04649 5.20777 5.29839 5.33885 5.45366 5.59831 5.65860 5.79908 6.03364 6.24245 6.43198 6.89064 7.11174 7.42583 8.92522 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.011551 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.748050 B = 2423.549759 C = 2836.210237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 H 0.079 0.921 4 C 0.490 3.510 5 O -0.528 6.528 6 O -0.507 6.507 7 N -0.503 5.503 8 C 0.200 3.800 9 C -0.534 4.534 10 H 0.058 0.942 11 C 0.019 3.981 12 N -0.923 5.923 13 Si 0.948 3.052 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.281 1.281 17 C 0.026 3.974 18 C -0.207 4.207 19 C -0.167 4.167 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.426 0.574 24 H 0.012 0.988 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -1.895 10.030 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.015 4.015 3 H 0.096 0.904 4 C 0.332 3.668 5 O -0.417 6.417 6 O -0.320 6.320 7 N -0.227 5.227 8 C 0.075 3.925 9 C -0.573 4.573 10 H 0.076 0.924 11 C -0.180 4.180 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.206 1.206 17 C -0.083 4.083 18 C -0.245 4.245 19 C -0.205 4.205 20 H 0.106 0.894 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.288 0.712 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.040 -2.381 9.549 10.051 hybrid contribution 0.714 1.337 -0.018 1.515 sum 2.754 -1.044 9.532 9.976 Atomic orbital electron populations 1.21656 0.90587 1.02567 1.03547 1.21089 0.98355 0.96344 0.85760 0.90350 1.23441 0.76257 0.81921 0.85148 1.90670 1.36718 1.26917 1.87414 1.84499 1.72089 1.58972 1.16474 1.62171 1.08067 1.50302 1.02150 1.19605 0.95234 0.91361 0.86325 1.21790 1.31368 0.95065 1.09113 0.92410 1.25628 0.94923 1.02331 0.95152 1.70052 1.36410 1.36820 1.12999 0.85654 0.78051 0.80876 0.78001 1.19079 1.21074 1.20643 1.22430 0.87396 1.04452 0.94043 1.23605 1.01876 0.95860 1.03177 1.22984 1.02183 0.92825 1.02551 0.89398 0.91916 0.92132 0.71240 0.96961 0.95914 0.92746 0.87727 0.88276 0.89028 0.87514 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 8.89 71.98 0.64 -3.67 16 2 C 0.09 3.56 2.21 44.17 0.10 3.65 16 3 H 0.08 3.15 6.26 -2.39 -0.01 3.14 16 4 C 0.49 16.16 7.06 71.24 0.50 16.67 16 5 O -0.53 -19.88 14.81 21.96 0.33 -19.55 16 6 O -0.51 -12.18 13.33 -51.40 -0.69 -12.86 16 7 N -0.50 -21.76 4.61 -854.81 -3.94 -25.70 16 8 C 0.20 9.94 4.15 85.55 0.36 10.30 16 9 C -0.53 -27.30 5.69 25.60 0.15 -27.16 16 10 H 0.06 2.93 6.30 -2.91 -0.02 2.92 16 11 C 0.02 1.03 5.46 84.65 0.46 1.49 16 12 N -0.92 -52.15 13.29 21.45 0.28 -51.86 16 13 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 C 0.03 1.07 4.60 44.92 0.21 1.28 16 18 C -0.21 -8.40 8.68 30.60 0.27 -8.14 16 19 C -0.17 -6.30 10.08 30.59 0.31 -5.99 16 20 H 0.09 2.47 8.11 -2.39 -0.02 2.45 16 21 H 0.06 2.46 6.52 -2.39 -0.02 2.45 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.43 5.84 9.10 -74.06 -0.67 5.16 16 24 H 0.01 0.67 6.35 -2.38 -0.02 0.66 16 25 H 0.02 1.22 6.59 -2.39 -0.02 1.20 16 26 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 27 H 0.11 4.17 5.97 -2.39 -0.01 4.16 16 28 H 0.10 4.75 4.91 -2.39 -0.01 4.74 16 29 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.08 3.10 8.04 -2.38 -0.02 3.08 16 Total: -1.00 -61.14 254.62 1.47 -59.67 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.47 Total: 17.87 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 2.98 Total: -11.57 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.65 Total: -77.56 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.36 Total: -32.42 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.14 1.47 -59.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415017.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.689 kcal (2) G-P(sol) polarization free energy of solvation -61.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds