Wall clock time and date at job start Sun Mar 29 2020 21:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46834 * 2 1 4 4 C 1.50697 * 109.47151 * 240.00194 * 2 1 3 5 5 O 1.20827 * 120.00564 * 240.00164 * 4 2 1 6 6 O 1.34235 * 120.00011 * 60.00011 * 4 2 1 7 7 N 1.46897 * 109.47025 * 120.00250 * 2 1 3 8 8 C 1.46899 * 111.00109 * 290.23975 * 7 2 1 9 9 C 1.50700 * 109.47121 * 201.37198 * 8 7 2 10 10 H 1.08000 * 120.00144 * 4.91202 * 9 8 7 11 11 C 1.37874 * 119.99941 * 184.91642 * 9 8 7 12 12 N 1.31518 * 119.99748 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00198 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47433 * 89.99796 * 13 11 9 15 15 H 1.48508 * 109.47132 * 210.00125 * 13 11 9 16 16 H 1.48508 * 109.46854 * 329.99538 * 13 11 9 17 17 C 1.46900 * 111.00235 * 54.19230 * 7 2 1 18 18 C 1.53001 * 117.49896 * 287.24179 * 17 7 2 19 19 C 1.52999 * 117.49956 * 218.61495 * 17 7 2 20 20 H 1.08995 * 109.47374 * 291.81877 * 1 2 3 21 21 H 1.08996 * 109.47223 * 51.82443 * 1 2 3 22 22 H 1.09000 * 109.46953 * 171.81758 * 1 2 3 23 23 H 0.96704 * 117.00136 * 180.02562 * 6 4 2 24 24 H 1.09000 * 109.46744 * 321.36671 * 8 7 2 25 25 H 1.08996 * 109.47530 * 81.36565 * 8 7 2 26 26 H 0.97010 * 119.99858 * 179.97438 * 12 11 9 27 27 H 1.09004 * 115.56346 * 72.92297 * 17 7 2 28 28 H 1.09000 * 117.50269 * 145.01792 * 18 17 7 29 29 H 1.08999 * 117.49853 * 359.97438 * 18 17 7 30 30 H 1.08994 * 117.49701 * 0.02562 * 19 17 7 31 31 H 1.09002 * 117.49894 * 214.97555 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6928 -1.1197 6 8 1.7081 -0.2517 -2.4496 7 7 2.0197 -0.6925 1.1994 8 6 1.7478 0.0945 2.4096 9 6 2.6793 -0.3406 3.5115 10 1 3.4531 -1.0664 3.3094 11 6 2.5436 0.1879 4.7777 12 7 3.3562 -0.1921 5.7394 13 14 1.2047 1.4427 5.1275 14 1 -0.0313 0.7409 5.5575 15 1 1.6546 2.3588 6.2063 16 1 0.9267 2.2260 3.8969 17 6 1.4387 -2.0376 1.3047 18 6 -0.0365 -2.1413 1.6973 19 6 1.0513 -2.5326 2.6997 20 1 -0.3634 0.3819 0.9540 21 1 -0.3633 0.6351 -0.8078 22 1 -0.3633 -1.0172 -0.1463 23 1 2.0535 -0.7409 -3.2089 24 1 1.9045 1.1522 2.1979 25 1 0.7158 -0.0644 2.7222 26 1 3.2609 0.1800 6.6302 27 1 1.8244 -2.7732 0.5988 28 1 -0.6212 -2.9450 1.2497 29 1 -0.5758 -1.2114 1.8778 30 1 1.2271 -1.8600 3.5391 31 1 1.1822 -3.5938 2.9115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:59 Heat of formation + Delta-G solvation = -65.817051 kcal Electronic energy + Delta-G solvation = -15006.769721 eV Core-core repulsion = 12482.050997 eV Total energy + Delta-G solvation = -2524.718724 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59487 -39.85495 -36.95386 -35.05307 -34.79899 -31.81548 -28.91356 -26.05997 -24.18930 -23.00076 -22.43601 -20.35398 -19.01742 -18.84169 -17.69821 -17.00856 -16.62941 -16.26524 -15.90550 -15.07207 -14.64893 -14.43388 -14.01400 -13.62005 -13.35543 -13.07471 -12.67873 -12.54286 -12.45290 -12.18845 -12.07007 -11.78513 -11.63685 -11.34942 -11.15423 -10.80602 -10.70447 -8.94867 -8.22885 -6.22526 1.30234 1.37631 1.39280 1.49207 2.03607 2.37240 2.94346 3.09162 3.19120 4.01025 4.06605 4.14274 4.21184 4.29862 4.35673 4.65883 4.73114 4.81294 4.90081 4.99656 5.08314 5.21509 5.27547 5.56716 5.62768 5.70634 5.96951 6.30466 6.61838 6.81763 7.12587 7.35406 8.93952 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038535 B = 0.010096 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.429530 B = 2772.695320 C = 2865.927165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 H 0.124 0.876 4 C 0.493 3.507 5 O -0.535 6.535 6 O -0.506 6.506 7 N -0.506 5.506 8 C 0.171 3.829 9 C -0.496 4.496 10 H 0.030 0.970 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.940 3.060 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.242 1.242 17 C 0.024 3.976 18 C -0.201 4.201 19 C -0.199 4.199 20 H 0.067 0.933 21 H 0.092 0.908 22 H 0.072 0.928 23 H 0.426 0.574 24 H 0.034 0.966 25 H 0.012 0.988 26 H 0.265 0.735 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 1.776 -13.624 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.026 4.026 3 H 0.141 0.859 4 C 0.335 3.665 5 O -0.424 6.424 6 O -0.320 6.320 7 N -0.229 5.229 8 C 0.045 3.955 9 C -0.535 4.535 10 H 0.049 0.951 11 C -0.189 4.189 12 N -0.589 5.589 13 Si 0.763 3.237 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.165 1.165 17 C -0.085 4.085 18 C -0.240 4.240 19 C -0.236 4.236 20 H 0.086 0.914 21 H 0.111 0.889 22 H 0.091 0.909 23 H 0.287 0.713 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.442 1.716 -13.157 16.285 hybrid contribution -0.378 -0.057 0.328 0.504 sum -9.820 1.659 -12.829 16.241 Atomic orbital electron populations 1.22554 0.92606 1.04069 1.03902 1.21426 0.96403 0.98447 0.86347 0.85859 1.23335 0.76162 0.81878 0.85082 1.90682 1.36646 1.27592 1.87470 1.84472 1.72044 1.59037 1.16397 1.61607 1.57559 1.01887 1.01864 1.20068 0.94952 0.93206 0.87276 1.21054 1.15168 1.23784 0.93446 0.95144 1.25781 0.98694 0.98689 0.95707 1.70065 1.40363 1.45763 1.02746 0.85824 0.79346 0.79426 0.79094 1.19059 1.21237 1.16505 1.22528 0.94442 0.92193 0.99325 1.23699 0.92339 1.03713 1.04265 1.23574 1.03240 1.01764 0.95010 0.91390 0.88929 0.90871 0.71255 0.94826 0.97086 0.92570 0.87052 0.87102 0.88193 0.87574 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 7.43 71.98 0.53 -3.75 16 2 C 0.08 2.61 2.81 44.17 0.12 2.74 16 3 H 0.12 3.59 7.82 -2.39 -0.02 3.58 16 4 C 0.49 14.76 7.39 71.23 0.53 15.28 16 5 O -0.54 -20.13 15.29 21.96 0.34 -19.79 16 6 O -0.51 -10.34 13.35 -51.47 -0.69 -11.02 16 7 N -0.51 -20.96 4.36 -854.80 -3.73 -24.69 16 8 C 0.17 7.75 2.65 85.56 0.23 7.97 16 9 C -0.50 -28.01 6.99 25.60 0.18 -27.83 16 10 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 11 C 0.01 0.47 5.47 84.65 0.46 0.93 16 12 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 13 Si 0.94 42.12 27.37 68.60 1.88 43.99 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.24 -9.75 6.69 99.48 0.67 -9.09 16 17 C 0.02 0.95 5.01 44.92 0.22 1.17 16 18 C -0.20 -6.48 7.24 30.60 0.22 -6.26 16 19 C -0.20 -8.15 9.18 30.60 0.28 -7.87 16 20 H 0.07 1.77 5.83 -2.39 -0.01 1.75 16 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.07 1.79 5.86 -2.39 -0.01 1.77 16 23 H 0.43 4.87 9.10 -74.05 -0.67 4.20 16 24 H 0.03 1.48 7.11 -2.39 -0.02 1.46 16 25 H 0.01 0.49 4.22 -2.39 -0.01 0.48 16 26 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.11 4.50 6.67 -2.39 -0.02 4.48 16 28 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.10 3.10 4.93 -2.39 -0.01 3.09 16 30 H 0.11 5.21 4.76 -2.39 -0.01 5.20 16 31 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -70.23 246.49 1.32 -68.91 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.44 Total: 18.70 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 2.78 Total: -17.60 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -3.43 Total: -83.18 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.35 Total: -30.82 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 43.99 kcal Total: -70.23 1.32 -68.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.093 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds