Wall clock time and date at job start Sun Mar 29 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99527 * 3 2 1 6 6 H 1.48503 * 109.47265 * 149.99878 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47062 * 174.36084 * 9 7 2 11 11 C 1.46903 * 110.99590 * 161.83379 * 10 9 7 12 12 C 1.53008 * 109.46836 * 189.99914 * 11 10 9 13 13 C 1.53003 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46537 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.46671 * 180.02562 * 14 13 12 16 16 C 1.46897 * 111.00039 * 285.78841 * 10 9 7 17 17 C 1.52997 * 117.50034 * 137.96017 * 16 10 9 18 18 C 1.52999 * 117.50125 * 69.29756 * 16 10 9 19 19 H 0.97000 * 119.99959 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47326 * 54.36333 * 9 7 2 21 21 H 1.08995 * 109.46813 * 294.36173 * 9 7 2 22 22 H 1.08994 * 109.47262 * 70.00322 * 11 10 9 23 23 H 1.09001 * 109.47040 * 309.99923 * 11 10 9 24 24 H 1.08997 * 109.46935 * 300.00479 * 12 11 10 25 25 H 1.09004 * 109.46673 * 60.00262 * 12 11 10 26 26 H 1.09001 * 109.47091 * 300.00066 * 13 12 11 27 27 H 1.08996 * 109.46685 * 60.00242 * 13 12 11 28 28 H 1.09001 * 109.47255 * 299.99685 * 14 13 12 29 29 H 1.08994 * 109.47262 * 60.00217 * 14 13 12 30 30 H 0.96703 * 114.00380 * 180.02562 * 15 14 13 31 31 H 1.09005 * 115.54791 * 283.62648 * 16 10 9 32 32 H 1.09000 * 117.49441 * 359.97438 * 17 16 10 33 33 H 1.08995 * 117.50263 * 145.01542 * 17 16 10 34 34 H 1.08994 * 117.49727 * 214.97908 * 18 16 10 35 35 H 1.08998 * 117.49758 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.1999 -3.6124 -0.1349 11 6 1.5875 -4.8800 0.2845 12 6 2.6645 -5.9636 0.3684 13 6 2.0267 -7.2837 0.8060 14 6 3.1039 -8.3670 0.8905 15 8 2.5082 -9.6002 1.2985 16 6 2.7113 -3.7040 -1.5090 17 6 4.2043 -3.9851 -1.6899 18 6 3.6454 -2.5922 -1.9908 19 1 -0.4850 0.8400 -0.0004 20 1 0.5511 -2.5146 -0.8349 21 1 0.7019 -2.6016 0.9365 22 1 0.8305 -5.1757 -0.4418 23 1 1.1229 -4.7530 1.2624 24 1 3.1291 -6.0904 -0.6093 25 1 3.4215 -5.6678 1.0948 26 1 1.5624 -7.1564 1.7839 27 1 1.2695 -7.5795 0.0799 28 1 3.5686 -8.4944 -0.0873 29 1 3.8608 -8.0709 1.6167 30 1 3.1341 -10.3335 1.3738 31 1 2.0257 -4.1365 -2.2378 32 1 4.8071 -4.1017 -0.7893 33 1 4.5011 -4.6022 -2.5379 34 1 3.5748 -2.2935 -3.0366 35 1 3.8802 -1.7925 -1.2883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:44 Heat of formation + Delta-G solvation = -32.459123 kcal Electronic energy + Delta-G solvation = -14362.912979 eV Core-core repulsion = 11975.473858 eV Total energy + Delta-G solvation = -2387.439121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.97497 -37.05683 -34.34889 -33.15080 -31.80949 -28.16221 -25.85327 -22.54846 -22.22205 -21.59369 -20.76248 -19.34665 -17.34610 -16.47306 -15.80841 -14.95385 -14.62511 -14.57630 -14.03244 -13.55433 -13.28088 -12.59614 -12.07993 -11.79612 -11.53071 -11.44795 -11.18003 -10.92449 -10.81810 -10.65145 -10.55540 -10.35887 -10.01502 -9.86051 -9.49560 -9.07287 -9.06608 -8.37352 -7.25253 -5.98287 -3.98156 3.33278 3.39697 3.43225 4.12257 4.45180 4.61410 4.88188 5.02206 5.14915 5.36500 5.38808 5.53831 5.66127 5.69865 5.78677 5.89200 5.98735 6.08108 6.20527 6.24373 6.26062 6.40684 6.59912 6.65775 6.73974 7.04170 7.26743 7.42713 7.51767 7.89502 8.15730 8.25003 8.59183 9.08146 9.64438 11.12526 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045964 B = 0.006290 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.025323 B = 4450.271890 C = 4812.524923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.194 3.806 10 N -0.512 5.512 11 C 0.061 3.939 12 C -0.109 4.109 13 C -0.119 4.119 14 C 0.076 3.924 15 O -0.578 6.578 16 C 0.028 3.972 17 C -0.186 4.186 18 C -0.158 4.158 19 H 0.260 0.740 20 H -0.003 1.003 21 H 0.025 0.975 22 H 0.021 0.979 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.375 0.625 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 -12.720 -0.937 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.237 5.237 11 C -0.067 4.067 12 C -0.147 4.147 13 C -0.158 4.158 14 C -0.001 4.001 15 O -0.383 6.383 16 C -0.082 4.082 17 C -0.224 4.224 18 C -0.195 4.195 19 H 0.070 0.930 20 H 0.015 0.985 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.458 -12.106 -0.614 13.735 hybrid contribution 0.125 0.469 -0.600 0.772 sum 6.583 -11.637 -1.215 13.425 Atomic orbital electron populations 1.69958 1.06048 1.26613 1.51483 1.24985 0.94821 0.99182 0.95752 0.86564 0.79837 0.83415 0.78017 1.20759 1.21353 1.19797 1.21254 0.93512 0.89702 1.49181 0.91377 1.19716 0.89876 0.87427 0.96006 1.61911 1.39286 1.03269 1.19208 1.21985 0.94664 0.90196 0.99894 1.21486 0.98865 0.92584 1.01802 1.21522 0.98009 0.93680 1.02551 1.22244 0.95677 0.84220 0.97998 1.86491 1.39763 1.20496 1.91575 1.22033 0.91088 1.03885 0.91162 1.23033 0.97048 1.00390 1.01952 1.23161 1.02482 0.92705 1.01109 0.93043 0.98542 0.95735 0.96075 0.91376 0.91788 0.91401 0.91366 0.91645 0.93814 0.93647 0.77831 0.91551 0.89052 0.90401 0.90285 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -13.79 7.82 -34.44 -0.27 -14.06 16 8 H 0.07 1.85 5.55 -52.48 -0.29 1.56 16 9 C 0.19 5.09 4.75 -4.98 -0.02 5.07 16 10 N -0.51 -11.09 4.58 -228.08 -1.05 -12.14 16 11 C 0.06 1.12 4.95 -3.82 -0.02 1.10 16 12 C -0.11 -1.61 5.04 -26.73 -0.13 -1.74 16 13 C -0.12 -1.56 5.58 -26.73 -0.15 -1.71 16 14 C 0.08 0.84 7.05 37.16 0.26 1.11 16 15 O -0.58 -6.52 13.66 -35.23 -0.48 -7.00 16 16 C 0.03 0.55 4.19 -67.72 -0.28 0.26 16 17 C -0.19 -3.08 9.31 -26.69 -0.25 -3.33 16 18 C -0.16 -3.04 9.41 -26.69 -0.25 -3.29 16 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.00 -0.10 8.02 -51.93 -0.42 -0.51 16 21 H 0.02 0.68 7.76 -51.93 -0.40 0.28 16 22 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 23 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 24 H 0.06 0.92 6.61 -51.93 -0.34 0.58 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 2.34 9.12 45.56 0.42 2.75 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.12 2.56 5.32 -51.93 -0.28 2.29 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -30.69 285.88 -7.80 -38.49 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.08 Total: 1.12 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.22 Total: -15.19 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.31 Total: -38.28 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.48 Total: -7.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.69 -7.80 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.031 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds