Wall clock time and date at job start Sun Mar 29 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47317 * 29.99527 * 3 2 1 6 6 H 1.48503 * 109.47265 * 149.99878 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47062 * 174.36084 * 9 7 2 11 11 C 1.46903 * 110.99590 * 161.83379 * 10 9 7 12 12 C 1.53008 * 109.46836 * 189.99914 * 11 10 9 13 13 C 1.53003 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46537 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.46671 * 180.02562 * 14 13 12 16 16 C 1.46897 * 111.00039 * 285.78841 * 10 9 7 17 17 C 1.52997 * 117.50034 * 137.96017 * 16 10 9 18 18 C 1.52999 * 117.50125 * 69.29756 * 16 10 9 19 19 H 0.97000 * 119.99959 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47326 * 54.36333 * 9 7 2 21 21 H 1.08995 * 109.46813 * 294.36173 * 9 7 2 22 22 H 1.08994 * 109.47262 * 70.00322 * 11 10 9 23 23 H 1.09001 * 109.47040 * 309.99923 * 11 10 9 24 24 H 1.08997 * 109.46935 * 300.00479 * 12 11 10 25 25 H 1.09004 * 109.46673 * 60.00262 * 12 11 10 26 26 H 1.09001 * 109.47091 * 300.00066 * 13 12 11 27 27 H 1.08996 * 109.46685 * 60.00242 * 13 12 11 28 28 H 1.09001 * 109.47255 * 299.99685 * 14 13 12 29 29 H 1.08994 * 109.47262 * 60.00217 * 14 13 12 30 30 H 0.96703 * 114.00380 * 180.02562 * 15 14 13 31 31 H 1.09005 * 115.54791 * 283.62648 * 16 10 9 32 32 H 1.09000 * 117.49441 * 359.97438 * 17 16 10 33 33 H 1.08995 * 117.50263 * 145.01542 * 17 16 10 34 34 H 1.08994 * 117.49727 * 214.97908 * 18 16 10 35 35 H 1.08998 * 117.49758 * 359.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.1999 -3.6124 -0.1349 11 6 1.5875 -4.8800 0.2845 12 6 2.6645 -5.9636 0.3684 13 6 2.0267 -7.2837 0.8060 14 6 3.1039 -8.3670 0.8905 15 8 2.5082 -9.6002 1.2985 16 6 2.7113 -3.7040 -1.5090 17 6 4.2043 -3.9851 -1.6899 18 6 3.6454 -2.5922 -1.9908 19 1 -0.4850 0.8400 -0.0004 20 1 0.5511 -2.5146 -0.8349 21 1 0.7019 -2.6016 0.9365 22 1 0.8305 -5.1757 -0.4418 23 1 1.1229 -4.7530 1.2624 24 1 3.1291 -6.0904 -0.6093 25 1 3.4215 -5.6678 1.0948 26 1 1.5624 -7.1564 1.7839 27 1 1.2695 -7.5795 0.0799 28 1 3.5686 -8.4944 -0.0873 29 1 3.8608 -8.0709 1.6167 30 1 3.1341 -10.3335 1.3738 31 1 2.0257 -4.1365 -2.2378 32 1 4.8071 -4.1017 -0.7893 33 1 4.5011 -4.6022 -2.5379 34 1 3.5748 -2.2935 -3.0366 35 1 3.8802 -1.7925 -1.2883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:44 Heat of formation + Delta-G solvation = -54.794724 kcal Electronic energy + Delta-G solvation = -14363.881523 eV Core-core repulsion = 11975.473858 eV Total energy + Delta-G solvation = -2388.407665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51102 -37.99351 -35.67593 -35.07645 -33.45802 -29.81536 -27.49850 -24.23552 -23.74367 -23.04046 -21.95017 -20.97933 -18.60533 -18.11608 -16.91499 -16.66076 -16.49474 -15.95870 -15.32527 -14.98850 -14.54160 -14.37798 -13.83734 -13.36185 -13.12925 -12.93542 -12.66985 -12.55386 -12.37657 -12.27854 -11.84853 -11.71964 -11.62265 -11.17909 -10.96007 -10.83384 -10.66020 -10.51889 -9.03478 -8.15522 -6.23442 1.42044 1.43123 1.54279 2.42132 3.02114 3.15522 3.19468 3.51532 4.00756 4.13842 4.21289 4.29701 4.33307 4.40977 4.51272 4.63950 4.77228 4.77690 4.91859 4.93359 4.94583 5.05258 5.12609 5.21637 5.35013 5.37947 5.44463 5.51718 5.79294 6.11230 6.42509 6.66513 6.92024 6.94775 7.44525 8.95688 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045964 B = 0.006290 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.025323 B = 4450.271890 C = 4812.524923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.208 3.792 10 N -0.516 5.516 11 C 0.058 3.942 12 C -0.092 4.092 13 C -0.117 4.117 14 C 0.080 3.920 15 O -0.598 6.598 16 C 0.000 4.000 17 C -0.141 4.141 18 C -0.175 4.175 19 H 0.262 0.738 20 H -0.038 1.038 21 H -0.003 1.003 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.397 0.603 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -13.591 -1.443 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.240 5.240 11 C -0.070 4.070 12 C -0.130 4.130 13 C -0.155 4.155 14 C 0.002 3.998 15 O -0.407 6.407 16 C -0.109 4.109 17 C -0.178 4.178 18 C -0.212 4.212 19 H 0.070 0.930 20 H -0.020 1.020 21 H 0.015 0.985 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.769 -13.016 -1.121 15.735 hybrid contribution -0.614 0.663 -0.445 1.007 sum 8.155 -12.353 -1.566 14.885 Atomic orbital electron populations 1.70102 1.07827 1.27607 1.52662 1.25897 0.95626 1.03076 0.95294 0.85450 0.78653 0.78578 0.78381 1.19845 1.21163 1.18703 1.21559 0.93823 0.90427 1.48546 0.90906 1.19382 0.89890 0.89426 0.93102 1.61872 1.37834 1.03318 1.20954 1.22093 0.95992 0.89997 0.98933 1.21300 0.97403 0.91862 1.02416 1.21447 0.98606 0.93714 1.01769 1.22155 0.94720 0.83622 0.99263 1.86427 1.41311 1.21311 1.91646 1.22163 0.93092 1.05620 0.89997 1.23079 0.93637 0.98005 1.03089 1.23122 1.03588 0.93286 1.01204 0.92970 1.02037 0.98544 0.96550 0.92564 0.90800 0.91264 0.92278 0.92231 0.92284 0.92485 0.75272 0.91608 0.88585 0.86749 0.88967 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.51 -28.54 7.82 25.60 0.20 -28.34 16 8 H 0.07 3.99 5.55 -2.91 -0.02 3.97 16 9 C 0.21 11.36 4.75 85.56 0.41 11.77 16 10 N -0.52 -22.58 4.58 -875.51 -4.01 -26.59 16 11 C 0.06 2.14 4.95 86.31 0.43 2.57 16 12 C -0.09 -2.55 5.04 30.60 0.15 -2.40 16 13 C -0.12 -2.89 5.58 30.60 0.17 -2.72 16 14 C 0.08 1.55 7.05 71.98 0.51 2.06 16 15 O -0.60 -12.05 13.66 -148.98 -2.03 -14.09 16 16 C 0.00 0.01 4.19 44.91 0.19 0.20 16 17 C -0.14 -4.19 9.31 30.62 0.29 -3.91 16 18 C -0.17 -6.53 9.41 30.62 0.29 -6.24 16 19 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 20 H -0.04 -2.30 8.02 -2.39 -0.02 -2.32 16 21 H 0.00 -0.21 7.76 -2.39 -0.02 -0.22 16 22 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 23 H 0.06 2.17 7.84 -2.39 -0.02 2.15 16 24 H 0.07 1.92 6.61 -2.39 -0.02 1.90 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.40 3.87 9.12 -74.06 -0.68 3.19 16 31 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.09 3.93 5.32 -2.39 -0.01 3.92 16 Total: -1.00 -67.06 285.88 -0.27 -67.33 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.38 Total: 10.78 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.09 Total: -26.65 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.73 Total: -83.93 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -2.03 Total: -14.09 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.06 -0.27 -67.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.536 kcal (2) G-P(sol) polarization free energy of solvation -67.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds