Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.37095 * 120.00465 * 264.87230 * 3 2 1 5 5 H 1.08005 * 119.99848 * 144.39625 * 4 3 2 6 6 C 1.38953 * 119.99925 * 324.40642 * 4 3 2 7 7 N 1.31412 * 119.99792 * 338.67399 * 6 4 3 8 8 Si 1.86796 * 119.99888 * 158.67785 * 6 4 3 9 9 H 1.48497 * 109.47599 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47002 * 120.00084 * 8 6 4 11 11 H 1.48511 * 109.46832 * 239.99455 * 8 6 4 12 12 C 1.34784 * 119.99806 * 84.87703 * 3 2 1 13 13 O 1.21290 * 120.00027 * 184.68178 * 12 3 2 14 14 C 1.50696 * 119.99919 * 4.67410 * 12 3 2 15 15 H 1.08998 * 110.27975 * 310.06042 * 14 12 3 16 16 C 1.54953 * 110.30555 * 72.25595 * 14 12 3 17 17 C 1.55308 * 100.93860 * 155.35800 * 16 14 12 18 18 C 1.54381 * 102.25462 * 325.86332 * 17 16 14 19 19 O 1.43234 * 107.58713 * 21.35826 * 18 17 16 20 20 H 1.09002 * 109.46587 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47090 * 59.99766 * 1 2 3 22 22 H 1.09004 * 109.46964 * 299.99345 * 1 2 3 23 23 H 1.08996 * 109.47280 * 119.99834 * 2 1 3 24 24 H 1.08995 * 109.46758 * 240.00591 * 2 1 3 25 25 H 0.96999 * 119.99951 * 180.02562 * 7 6 4 26 26 H 1.08999 * 111.12266 * 273.27637 * 16 14 12 27 27 H 1.08993 * 111.12612 * 37.43946 * 16 14 12 28 28 H 1.08999 * 110.84539 * 207.67459 * 17 16 14 29 29 H 1.09001 * 111.02524 * 84.14054 * 17 16 14 30 30 H 1.08996 * 109.82868 * 261.84594 * 18 17 16 31 31 H 1.09005 * 109.82644 * 140.87302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3469 1.9922 -1.1825 5 1 2.1524 3.0459 -1.3181 6 6 2.9299 1.2558 -2.2065 7 7 3.5444 0.1262 -1.9358 8 14 2.8402 1.8716 -3.9677 9 1 2.0988 3.1577 -4.0054 10 1 4.2147 2.0766 -4.4911 11 1 2.1352 0.8696 -4.8071 12 6 2.1447 2.0513 1.1626 13 8 2.4673 3.2205 1.1568 14 6 1.8850 1.3479 2.4698 15 1 0.9297 0.8242 2.4337 16 6 3.0330 0.3557 2.7839 17 6 2.9290 0.2649 4.3308 18 6 2.4884 1.6940 4.7141 19 8 1.8965 2.2902 3.5540 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8901 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 3.9517 -0.3877 -2.6506 26 1 2.8519 -0.6140 2.3204 27 1 3.9974 0.7613 2.4781 28 1 3.8971 0.0263 4.7713 29 1 2.1779 -0.4661 4.6301 30 1 3.3546 2.2763 5.0280 31 1 1.7575 1.6514 5.5217 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = -75.745756 kcal Electronic energy + Delta-G solvation = -15003.252123 eV Core-core repulsion = 12478.102858 eV Total energy + Delta-G solvation = -2525.149265 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51955 -37.54255 -34.90278 -32.22906 -31.58927 -29.46469 -29.17408 -25.08980 -23.04810 -21.94308 -21.28181 -18.95381 -17.09014 -16.58781 -15.71320 -15.11415 -14.64672 -14.41352 -13.88288 -13.65174 -12.97512 -12.85766 -12.37936 -12.06881 -11.75964 -11.51433 -11.19407 -11.12272 -10.95676 -10.82768 -10.66108 -10.32111 -10.29651 -9.98753 -9.28565 -8.93318 -8.18825 -7.45225 -6.32513 -3.94251 3.16204 3.27218 3.34291 3.81659 4.00337 4.33926 4.74152 4.95422 5.01448 5.08085 5.34807 5.50262 5.62404 5.78785 5.84228 5.93450 5.95203 6.09273 6.16255 6.24443 6.33991 6.47174 6.54923 6.88613 7.24527 7.37957 7.60989 8.28497 8.55101 9.21469 9.42043 10.03907 10.71731 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045406 B = 0.009532 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.507877 B = 2936.756727 C = 3062.633687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.440 5.440 4 C -0.304 4.304 5 H 0.092 0.908 6 C 0.035 3.965 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.461 3.539 13 O -0.565 6.565 14 C 0.068 3.932 15 H 0.079 0.921 16 C -0.140 4.140 17 C -0.155 4.155 18 C 0.049 3.951 19 O -0.359 6.359 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.112 0.888 25 H 0.267 0.733 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -5.478 7.233 9.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.161 5.161 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.248 3.752 13 O -0.446 6.446 14 C 0.007 3.993 15 H 0.097 0.903 16 C -0.178 4.178 17 C -0.193 4.193 18 C -0.028 4.028 19 O -0.277 6.277 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.130 0.870 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.725 -4.812 7.106 9.004 hybrid contribution 0.073 -0.222 -0.783 0.817 sum -2.652 -5.035 6.322 8.506 Atomic orbital electron populations 1.22235 0.98239 1.00353 1.01638 1.21713 0.91773 0.85612 1.04242 1.43432 1.56267 1.11933 1.04454 1.19500 1.38470 0.96188 0.89048 0.89024 1.25345 0.94419 0.96566 1.00539 1.69927 1.32148 1.15886 1.32993 0.86009 0.78108 0.79122 0.82342 1.19158 1.20794 1.20612 1.20182 0.82336 0.88258 0.84422 1.90527 1.50752 1.16594 1.86764 1.22922 0.98545 0.89615 0.88222 0.90340 1.23217 0.99789 1.00118 0.94646 1.23131 1.02310 0.97396 0.96443 1.23106 0.97508 0.93068 0.89100 1.88499 1.81510 1.38022 1.19700 0.93017 0.92296 0.93937 0.93060 0.86986 0.92336 0.89104 0.89799 0.90176 0.90669 0.91646 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.09 37.16 0.37 -2.66 16 2 C 0.09 1.96 5.32 -4.04 -0.02 1.94 16 3 N -0.44 -11.36 2.55 -114.81 -0.29 -11.65 16 4 C -0.30 -8.57 8.97 -14.93 -0.13 -8.71 16 5 H 0.09 2.74 7.69 -52.48 -0.40 2.33 16 6 C 0.03 0.92 4.93 -17.47 -0.09 0.84 16 7 N -0.87 -23.21 11.39 55.50 0.63 -22.58 16 8 Si 0.92 20.68 29.60 -169.99 -5.03 15.65 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.46 12.01 6.94 -10.98 -0.08 11.94 16 13 O -0.56 -17.14 16.39 -13.66 -0.22 -17.37 16 14 C 0.07 1.39 2.93 -26.85 -0.08 1.32 16 15 H 0.08 1.46 6.37 -51.93 -0.33 1.13 16 16 C -0.14 -2.40 6.01 -24.48 -0.15 -2.55 16 17 C -0.16 -2.05 7.02 -24.78 -0.17 -2.23 16 18 C 0.05 0.75 7.79 37.88 0.30 1.04 16 19 O -0.36 -7.51 10.62 -54.44 -0.58 -8.09 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.04 0.74 6.90 -51.93 -0.36 0.38 16 23 H 0.05 0.99 4.68 -51.93 -0.24 0.74 16 24 H 0.11 2.66 5.44 -51.93 -0.28 2.37 16 25 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 26 H 0.09 1.43 6.29 -51.93 -0.33 1.11 16 27 H 0.08 1.61 8.05 -51.93 -0.42 1.20 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -32.41 254.44 -5.74 -38.15 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.03 Total: 1.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.05 Total: 0.93 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.34 Total: -34.23 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.80 Total: -25.46 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.41 -5.74 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.594 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds