Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46939 * 2 1 4 4 C 1.37095 * 120.00465 * 264.87230 * 3 2 1 5 5 H 1.08005 * 119.99848 * 144.39625 * 4 3 2 6 6 C 1.38953 * 119.99925 * 324.40642 * 4 3 2 7 7 N 1.31412 * 119.99792 * 338.67399 * 6 4 3 8 8 Si 1.86796 * 119.99888 * 158.67785 * 6 4 3 9 9 H 1.48497 * 109.47599 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47002 * 120.00084 * 8 6 4 11 11 H 1.48511 * 109.46832 * 239.99455 * 8 6 4 12 12 C 1.34784 * 119.99806 * 84.87703 * 3 2 1 13 13 O 1.21290 * 120.00027 * 184.68178 * 12 3 2 14 14 C 1.50696 * 119.99919 * 4.67410 * 12 3 2 15 15 H 1.08998 * 110.27975 * 310.06042 * 14 12 3 16 16 C 1.54953 * 110.30555 * 72.25595 * 14 12 3 17 17 C 1.55308 * 100.93860 * 155.35800 * 16 14 12 18 18 C 1.54381 * 102.25462 * 325.86332 * 17 16 14 19 19 O 1.43234 * 107.58713 * 21.35826 * 18 17 16 20 20 H 1.09002 * 109.46587 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47090 * 59.99766 * 1 2 3 22 22 H 1.09004 * 109.46964 * 299.99345 * 1 2 3 23 23 H 1.08996 * 109.47280 * 119.99834 * 2 1 3 24 24 H 1.08995 * 109.46758 * 240.00591 * 2 1 3 25 25 H 0.96999 * 119.99951 * 180.02562 * 7 6 4 26 26 H 1.08999 * 111.12266 * 273.27637 * 16 14 12 27 27 H 1.08993 * 111.12612 * 37.43946 * 16 14 12 28 28 H 1.08999 * 110.84539 * 207.67459 * 17 16 14 29 29 H 1.09001 * 111.02524 * 84.14054 * 17 16 14 30 30 H 1.08996 * 109.82868 * 261.84594 * 18 17 16 31 31 H 1.09005 * 109.82644 * 140.87302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3469 1.9922 -1.1825 5 1 2.1524 3.0459 -1.3181 6 6 2.9299 1.2558 -2.2065 7 7 3.5444 0.1262 -1.9358 8 14 2.8402 1.8716 -3.9677 9 1 2.0988 3.1577 -4.0054 10 1 4.2147 2.0766 -4.4911 11 1 2.1352 0.8696 -4.8071 12 6 2.1447 2.0513 1.1626 13 8 2.4673 3.2205 1.1568 14 6 1.8850 1.3479 2.4698 15 1 0.9297 0.8242 2.4337 16 6 3.0330 0.3557 2.7839 17 6 2.9290 0.2649 4.3308 18 6 2.4884 1.6940 4.7141 19 8 1.8965 2.2902 3.5540 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8901 23 1 1.8934 -0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 3.9517 -0.3877 -2.6506 26 1 2.8519 -0.6140 2.3204 27 1 3.9974 0.7613 2.4781 28 1 3.8971 0.0263 4.7713 29 1 2.1779 -0.4661 4.6301 30 1 3.3546 2.2763 5.0280 31 1 1.7575 1.6514 5.5217 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = -97.639891 kcal Electronic energy + Delta-G solvation = -15004.201524 eV Core-core repulsion = 12478.102858 eV Total energy + Delta-G solvation = -2526.098666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16676 -39.25880 -36.91633 -34.15619 -33.00492 -31.22785 -30.64458 -27.02402 -24.68019 -23.53488 -22.53930 -20.77358 -18.91899 -18.36180 -17.25078 -16.98979 -16.18477 -16.17953 -15.63352 -15.25456 -14.63296 -14.22652 -14.12165 -13.71376 -13.60631 -12.93724 -12.87786 -12.67274 -12.56471 -12.35762 -12.22683 -12.08910 -11.86858 -11.63596 -10.89738 -10.76810 -10.12466 -9.47329 -8.36993 -6.07794 1.34654 1.40839 1.54573 1.94554 2.23300 2.64941 2.97075 3.29027 3.53579 3.86653 3.92517 4.14733 4.22304 4.30020 4.42270 4.62091 4.70984 4.82685 4.83024 4.89328 5.00481 5.06142 5.21537 5.29959 5.44273 5.56000 5.98020 6.21659 6.54963 7.16136 7.42189 8.03492 8.65744 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045406 B = 0.009532 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.507877 B = 2936.756727 C = 3062.633687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.087 3.913 3 N -0.445 5.445 4 C -0.347 4.347 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.882 5.882 8 Si 0.981 3.019 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.439 3.561 13 O -0.629 6.629 14 C 0.075 3.925 15 H 0.104 0.896 16 C -0.139 4.139 17 C -0.136 4.136 18 C 0.036 3.964 19 O -0.397 6.397 20 H 0.091 0.909 21 H 0.040 0.960 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.276 0.724 26 H 0.108 0.892 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 -7.819 7.918 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.036 4.036 3 N -0.165 5.165 4 C -0.474 4.474 5 H 0.075 0.925 6 C -0.195 4.195 7 N -0.520 5.520 8 Si 0.805 3.195 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.184 1.184 12 C 0.228 3.772 13 O -0.515 6.515 14 C 0.014 3.986 15 H 0.122 0.878 16 C -0.177 4.177 17 C -0.174 4.174 18 C -0.040 4.040 19 O -0.317 6.317 20 H 0.110 0.890 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.278 -7.218 7.800 11.121 hybrid contribution 0.290 0.498 -0.984 1.141 sum -2.987 -6.719 6.815 10.026 Atomic orbital electron populations 1.22149 0.95461 1.02784 1.01157 1.21897 0.94044 0.83208 1.04424 1.43711 1.55569 1.13294 1.03931 1.19388 1.41251 0.95494 0.91316 0.92455 1.26052 0.93195 0.96589 1.03686 1.69969 1.31325 1.16211 1.34468 0.85083 0.78221 0.78661 0.77580 1.20035 1.20243 1.18358 1.21268 0.81485 0.87926 0.86519 1.90462 1.53728 1.19357 1.87965 1.22852 1.00877 0.89434 0.85392 0.87830 1.23207 0.96838 0.99488 0.98188 1.23134 1.04739 0.96750 0.92734 1.23471 0.98413 0.94200 0.87932 1.88459 1.82202 1.39777 1.21238 0.89003 0.94069 0.93186 0.90529 0.88987 0.91441 0.87360 0.92891 0.87737 0.87366 0.91649 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 10.09 71.98 0.73 -4.71 16 2 C 0.09 3.68 5.32 86.38 0.46 4.14 16 3 N -0.45 -23.59 2.55 -635.53 -1.62 -25.21 16 4 C -0.35 -20.32 8.97 84.04 0.75 -19.56 16 5 H 0.06 3.67 7.69 -2.91 -0.02 3.65 16 6 C 0.01 0.42 4.93 84.93 0.42 0.84 16 7 N -0.88 -46.75 11.39 21.66 0.25 -46.51 16 8 Si 0.98 42.60 29.60 68.60 2.03 44.64 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 12 C 0.44 23.64 6.94 87.65 0.61 24.25 16 13 O -0.63 -40.45 16.39 15.31 0.25 -40.20 16 14 C 0.08 3.03 2.93 30.51 0.09 3.12 16 15 H 0.10 3.61 6.37 -2.39 -0.02 3.60 16 16 C -0.14 -4.54 6.01 32.05 0.19 -4.35 16 17 C -0.14 -3.08 7.02 31.86 0.22 -2.85 16 18 C 0.04 1.00 7.79 72.45 0.56 1.56 16 19 O -0.40 -16.47 10.62 -130.61 -1.39 -17.86 16 20 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.05 1.64 6.90 -2.38 -0.02 1.62 16 23 H 0.08 2.79 4.68 -2.39 -0.01 2.78 16 24 H 0.09 4.30 5.44 -2.39 -0.01 4.28 16 25 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 26 H 0.11 3.09 6.29 -2.39 -0.02 3.08 16 27 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -74.52 254.44 4.68 -69.84 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.12 Total: 12.87 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.04 Total: 2.43 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.37 Total: -71.71 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -1.14 Total: -58.06 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.52 4.68 -69.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.801 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds