Wall clock time and date at job start Sun Mar 29 2020 21:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47005 * 2 1 4 4 C 1.37090 * 120.00015 * 264.51309 * 3 2 1 5 5 H 1.08004 * 120.00325 * 146.70185 * 4 3 2 6 6 C 1.38957 * 119.99944 * 326.71040 * 4 3 2 7 7 N 1.31405 * 120.00132 * 337.87666 * 6 4 3 8 8 Si 1.86804 * 119.99936 * 157.88371 * 6 4 3 9 9 H 1.48499 * 109.47161 * 59.99649 * 8 6 4 10 10 H 1.48497 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47082 * 299.99442 * 8 6 4 12 12 C 1.34777 * 119.99745 * 84.51608 * 3 2 1 13 13 O 1.21289 * 119.99765 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00155 * 359.97438 * 12 3 2 15 15 H 1.08996 * 110.54232 * 298.84424 * 14 12 3 16 16 C 1.54806 * 110.48890 * 176.22205 * 14 12 3 17 17 C 1.54994 * 102.09785 * 220.44822 * 16 14 12 18 18 O 1.44388 * 103.48923 * 37.02159 * 17 16 14 19 19 C 1.43745 * 106.97204 * 319.94191 * 18 17 16 20 20 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47319 * 299.99673 * 1 2 3 22 22 H 1.08998 * 109.47469 * 60.00064 * 1 2 3 23 23 H 1.09001 * 109.47319 * 240.00327 * 2 1 3 24 24 H 1.08998 * 109.47469 * 119.99935 * 2 1 3 25 25 H 0.97000 * 120.00024 * 179.97438 * 7 6 4 26 26 H 1.09001 * 110.90568 * 338.64562 * 16 14 12 27 27 H 1.08996 * 110.91030 * 102.24427 * 16 14 12 28 28 H 1.08999 * 110.61534 * 278.52647 * 17 16 14 29 29 H 1.08991 * 110.75733 * 155.58589 * 17 16 14 30 30 H 1.08998 * 109.88323 * 267.08646 * 19 18 17 31 31 H 1.08999 * 109.99978 * 146.00809 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3538 1.9897 -1.1818 5 1 2.1945 3.0505 -1.3074 6 6 2.8987 1.2415 -2.2182 7 7 3.4906 0.0967 -1.9616 8 14 2.7899 1.8632 -3.9764 9 1 3.4776 3.1752 -4.0810 10 1 3.4427 0.8888 -4.8873 11 1 1.3635 2.0200 -4.3587 12 6 2.1377 2.0538 1.1619 13 8 2.5416 3.1975 1.1619 14 6 1.7684 1.3851 2.4609 15 1 0.7158 1.1025 2.4599 16 6 2.0781 2.3173 3.6574 17 6 2.6600 1.3274 4.6984 18 8 3.4238 0.4031 3.8940 19 6 2.6581 0.1505 2.7040 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8706 -0.4257 -2.6851 26 1 2.8161 3.0709 3.3825 27 1 1.1676 2.7851 4.0320 28 1 1.8586 0.8076 5.2235 29 1 3.3071 1.8464 5.4054 30 1 2.0355 -0.7331 2.8444 31 1 3.3259 0.0020 1.8555 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:46 Heat of formation + Delta-G solvation = -74.407561 kcal Electronic energy + Delta-G solvation = -15059.074552 eV Core-core repulsion = 12533.983315 eV Total energy + Delta-G solvation = -2525.091236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66607 -37.60245 -35.05285 -32.32868 -31.36621 -29.48262 -28.92623 -25.04310 -23.26754 -22.05425 -21.30471 -18.75597 -16.89455 -16.30380 -15.76286 -15.66111 -14.90406 -14.36371 -13.92085 -13.64487 -12.90889 -12.70304 -12.36652 -12.03514 -11.86790 -11.36122 -11.12972 -11.05638 -11.00270 -10.71651 -10.49744 -10.35618 -10.20938 -10.04944 -9.42234 -8.94728 -8.36308 -7.51409 -6.34044 -3.94919 3.18405 3.24958 3.28530 3.83842 4.12586 4.30096 4.76442 4.93567 5.03423 5.32377 5.43062 5.49544 5.61961 5.78456 5.89849 6.00970 6.04633 6.12052 6.21397 6.31658 6.41432 6.50457 6.63259 6.86488 7.17781 7.28127 7.59029 8.22652 8.50026 9.17277 9.40606 9.99742 10.69494 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044448 B = 0.009720 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.793368 B = 2879.845921 C = 3000.835627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 N -0.438 5.438 4 C -0.308 4.308 5 H 0.092 0.908 6 C 0.035 3.965 7 N -0.869 5.869 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.464 3.536 13 O -0.580 6.580 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.138 4.138 17 C 0.046 3.954 18 O -0.380 6.380 19 C 0.058 3.942 20 H 0.051 0.949 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.116 0.884 24 H 0.055 0.945 25 H 0.269 0.731 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -2.845 6.704 8.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.041 4.041 3 N -0.156 5.156 4 C -0.436 4.436 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.252 3.748 13 O -0.463 6.463 14 C -0.161 4.161 15 H 0.110 0.890 16 C -0.176 4.176 17 C -0.031 4.031 18 O -0.299 6.299 19 C -0.019 4.019 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.134 0.866 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.613 -2.534 6.608 8.448 hybrid contribution -0.399 0.130 -0.958 1.046 sum -5.011 -2.404 5.651 7.926 Atomic orbital electron populations 1.22205 0.98287 1.00355 1.01432 1.21862 0.91832 0.85692 1.04753 1.43493 1.55437 1.11847 1.04867 1.19433 1.40032 0.95307 0.88839 0.89032 1.25322 0.94535 0.96485 1.00523 1.69890 1.32974 1.14830 1.33022 0.86123 0.78604 0.78772 0.81980 1.19750 1.20948 1.19946 1.19969 0.82549 0.87879 0.84428 1.90495 1.50567 1.18805 1.86471 1.22634 1.00894 0.96544 0.96018 0.88968 1.23046 1.02400 0.98652 0.93499 1.23548 0.95209 0.90222 0.94122 1.88862 1.44146 1.64988 1.31886 1.23325 0.94644 0.95500 0.88417 0.93034 0.94058 0.92417 0.86603 0.92642 0.92111 0.88622 0.90675 0.92739 0.89319 0.92271 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.15 37.16 0.38 -2.57 16 2 C 0.08 1.78 5.19 -4.04 -0.02 1.75 16 3 N -0.44 -11.10 2.53 -114.81 -0.29 -11.39 16 4 C -0.31 -8.58 8.99 -14.93 -0.13 -8.72 16 5 H 0.09 2.68 7.69 -52.48 -0.40 2.27 16 6 C 0.04 0.93 4.93 -17.47 -0.09 0.84 16 7 N -0.87 -23.23 11.28 55.50 0.63 -22.61 16 8 Si 0.92 20.59 29.61 -169.99 -5.03 15.56 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.46 11.49 6.81 -10.99 -0.07 11.41 16 13 O -0.58 -16.43 15.28 5.55 0.08 -16.34 16 14 C -0.14 -2.65 2.68 -90.24 -0.24 -2.89 16 15 H 0.09 1.55 6.62 -51.93 -0.34 1.20 16 16 C -0.14 -2.34 6.50 -24.73 -0.16 -2.51 16 17 C 0.05 0.67 7.72 38.21 0.29 0.97 16 18 O -0.38 -7.01 11.52 -35.23 -0.41 -7.42 16 19 C 0.06 1.06 5.43 37.73 0.20 1.27 16 20 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 21 H 0.04 0.68 6.62 -51.93 -0.34 0.34 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.12 2.76 5.30 -51.93 -0.28 2.49 16 24 H 0.06 1.08 4.18 -51.93 -0.22 0.86 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.10 1.89 6.93 -51.93 -0.36 1.53 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.10 2.07 6.66 -51.93 -0.35 1.72 16 LS Contribution 250.74 15.07 3.78 3.78 Total: -1.00 -31.01 250.74 -5.02 -36.03 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.94 Total: 2.81 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 0.16 Total: -0.43 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.34 Total: -34.00 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.32 Total: -23.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.01 -5.02 -36.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.374 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds