Wall clock time and date at job start Sun Mar 29 2020 21:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47005 * 2 1 4 4 C 1.37090 * 120.00015 * 264.51309 * 3 2 1 5 5 H 1.08004 * 120.00325 * 146.70185 * 4 3 2 6 6 C 1.38957 * 119.99944 * 326.71040 * 4 3 2 7 7 N 1.31405 * 120.00132 * 337.87666 * 6 4 3 8 8 Si 1.86804 * 119.99936 * 157.88371 * 6 4 3 9 9 H 1.48499 * 109.47161 * 59.99649 * 8 6 4 10 10 H 1.48497 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47082 * 299.99442 * 8 6 4 12 12 C 1.34777 * 119.99745 * 84.51608 * 3 2 1 13 13 O 1.21289 * 119.99765 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00155 * 359.97438 * 12 3 2 15 15 H 1.08996 * 110.54232 * 298.84424 * 14 12 3 16 16 C 1.54806 * 110.48890 * 176.22205 * 14 12 3 17 17 C 1.54994 * 102.09785 * 220.44822 * 16 14 12 18 18 O 1.44388 * 103.48923 * 37.02159 * 17 16 14 19 19 C 1.43745 * 106.97204 * 319.94191 * 18 17 16 20 20 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47319 * 299.99673 * 1 2 3 22 22 H 1.08998 * 109.47469 * 60.00064 * 1 2 3 23 23 H 1.09001 * 109.47319 * 240.00327 * 2 1 3 24 24 H 1.08998 * 109.47469 * 119.99935 * 2 1 3 25 25 H 0.97000 * 120.00024 * 179.97438 * 7 6 4 26 26 H 1.09001 * 110.90568 * 338.64562 * 16 14 12 27 27 H 1.08996 * 110.91030 * 102.24427 * 16 14 12 28 28 H 1.08999 * 110.61534 * 278.52647 * 17 16 14 29 29 H 1.08991 * 110.75733 * 155.58589 * 17 16 14 30 30 H 1.08998 * 109.88323 * 267.08646 * 19 18 17 31 31 H 1.08999 * 109.99978 * 146.00809 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3538 1.9897 -1.1818 5 1 2.1945 3.0505 -1.3074 6 6 2.8987 1.2415 -2.2182 7 7 3.4906 0.0967 -1.9616 8 14 2.7899 1.8632 -3.9764 9 1 3.4776 3.1752 -4.0810 10 1 3.4427 0.8888 -4.8873 11 1 1.3635 2.0200 -4.3587 12 6 2.1377 2.0538 1.1619 13 8 2.5416 3.1975 1.1619 14 6 1.7684 1.3851 2.4609 15 1 0.7158 1.1025 2.4599 16 6 2.0781 2.3173 3.6574 17 6 2.6600 1.3274 4.6984 18 8 3.4238 0.4031 3.8940 19 6 2.6581 0.1505 2.7040 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8706 -0.4257 -2.6851 26 1 2.8161 3.0709 3.3825 27 1 1.1676 2.7851 4.0320 28 1 1.8586 0.8076 5.2235 29 1 3.3071 1.8464 5.4054 30 1 2.0355 -0.7331 2.8444 31 1 3.3259 0.0020 1.8555 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:46 Heat of formation + Delta-G solvation = -96.037204 kcal Electronic energy + Delta-G solvation = -15060.012483 eV Core-core repulsion = 12533.983315 eV Total energy + Delta-G solvation = -2526.029168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28606 -39.23700 -36.99269 -34.21402 -32.94066 -31.19662 -30.29660 -27.00723 -24.83833 -23.47681 -22.88299 -20.49690 -18.83834 -17.89650 -17.30649 -17.23892 -16.71874 -15.95417 -15.57729 -15.36078 -14.57936 -14.36563 -13.81290 -13.75010 -13.58723 -12.95710 -12.78685 -12.69398 -12.40766 -12.27958 -12.22427 -12.11985 -11.76772 -11.69460 -10.89464 -10.80514 -10.24994 -9.49553 -8.35991 -6.05700 1.36944 1.40118 1.50463 1.98208 2.27759 2.91398 2.99554 3.07719 3.54470 3.87176 4.03086 4.17420 4.28345 4.37330 4.44573 4.63613 4.72772 4.75096 4.82677 4.85355 4.98980 5.06844 5.24114 5.32109 5.44278 5.57663 5.90178 6.18151 6.51739 7.15618 7.46180 8.04552 8.65556 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044448 B = 0.009720 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.793368 B = 2879.845921 C = 3000.835627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 N -0.449 5.449 4 C -0.347 4.347 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.885 5.885 8 Si 0.981 3.019 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.264 1.264 12 C 0.447 3.553 13 O -0.632 6.632 14 C -0.132 4.132 15 H 0.125 0.875 16 C -0.139 4.139 17 C 0.049 3.951 18 O -0.403 6.403 19 C 0.064 3.936 20 H 0.087 0.913 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.275 0.725 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -4.253 7.612 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 N -0.167 5.167 4 C -0.475 4.475 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.523 5.523 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.189 1.189 12 C 0.236 3.764 13 O -0.519 6.519 14 C -0.154 4.154 15 H 0.142 0.858 16 C -0.177 4.177 17 C -0.026 4.026 18 O -0.322 6.322 19 C -0.013 4.013 20 H 0.106 0.894 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.025 -3.984 7.525 10.431 hybrid contribution 0.088 0.576 -1.212 1.345 sum -5.938 -3.408 6.313 9.312 Atomic orbital electron populations 1.22111 0.95189 1.02650 1.01328 1.21993 0.94338 0.83511 1.04499 1.43782 1.55241 1.13131 1.04502 1.19379 1.42356 0.94670 0.91053 0.91981 1.26059 0.93483 0.96568 1.03784 1.69963 1.32596 1.15415 1.34310 0.85192 0.79028 0.78013 0.77297 1.20472 1.19423 1.18850 1.20993 0.81640 0.87514 0.86219 1.90450 1.52768 1.21157 1.87543 1.22650 1.02667 0.96919 0.93139 0.85762 1.23064 1.02894 0.98194 0.93535 1.23793 0.96300 0.89298 0.93253 1.88835 1.45489 1.65831 1.32088 1.23223 0.94044 0.96439 0.87584 0.89441 0.92483 0.94219 0.89065 0.90623 0.91527 0.92385 0.87752 0.88890 0.87512 0.88419 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.08 3.36 5.19 86.38 0.45 3.81 16 3 N -0.45 -23.23 2.53 -635.53 -1.61 -24.83 16 4 C -0.35 -20.01 8.99 84.04 0.76 -19.25 16 5 H 0.06 3.85 7.69 -2.91 -0.02 3.83 16 6 C 0.00 0.20 4.93 84.93 0.42 0.62 16 7 N -0.89 -47.77 11.28 21.66 0.24 -47.52 16 8 Si 0.98 42.61 29.61 68.60 2.03 44.64 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 C 0.45 22.57 6.81 87.66 0.60 23.17 16 13 O -0.63 -37.49 15.28 -3.06 -0.05 -37.54 16 14 C -0.13 -4.82 2.68 -10.55 -0.03 -4.85 16 15 H 0.12 3.71 6.62 -2.39 -0.02 3.70 16 16 C -0.14 -4.48 6.50 31.89 0.21 -4.27 16 17 C 0.05 1.29 7.72 72.66 0.56 1.85 16 18 O -0.40 -14.02 11.52 -148.98 -1.72 -15.74 16 19 C 0.06 2.23 5.43 72.36 0.39 2.62 16 20 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 21 H 0.06 1.72 6.62 -2.39 -0.02 1.70 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.09 4.35 5.30 -2.39 -0.01 4.34 16 24 H 0.08 2.84 4.18 -2.39 -0.01 2.83 16 25 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.06 2.32 6.93 -2.39 -0.02 2.30 16 27 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.65 7.79 -2.39 -0.02 2.63 16 31 H 0.06 2.53 6.66 -2.39 -0.02 2.51 16 Total: -1.00 -70.63 250.74 4.11 -66.52 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.13 Total: 15.23 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.08 Total: -0.75 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.36 Total: -72.36 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -1.76 Total: -53.28 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.63 4.11 -66.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.519 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds