Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00245 * 2 1 4 4 C 1.50704 * 109.47003 * 269.99494 * 3 2 1 5 5 H 1.07996 * 119.99617 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99784 * 179.97438 * 4 3 2 7 7 N 1.31522 * 120.00438 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46826 * 270.00685 * 8 6 4 10 10 H 1.48501 * 109.46892 * 29.99929 * 8 6 4 11 11 H 1.48491 * 109.47328 * 150.00429 * 8 6 4 12 12 C 1.34776 * 119.99936 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00183 * 175.04281 * 12 2 1 14 14 C 1.50707 * 119.99774 * 355.04081 * 12 2 1 15 15 H 1.08995 * 110.45878 * 32.19620 * 14 12 2 16 16 C 1.54506 * 110.50927 * 154.80055 * 14 12 2 17 17 C 1.54477 * 104.06280 * 118.64571 * 16 14 12 18 18 O 1.44416 * 104.80577 * 23.97922 * 17 16 14 19 19 C 1.44651 * 105.36744 * 319.56634 * 18 17 16 20 20 H 1.09006 * 109.46887 * 95.27116 * 1 2 3 21 21 H 1.08997 * 109.47540 * 215.27386 * 1 2 3 22 22 H 1.08999 * 109.47297 * 335.28051 * 1 2 3 23 23 H 1.09001 * 109.47482 * 149.99556 * 3 2 1 24 24 H 1.08999 * 109.47325 * 29.99514 * 3 2 1 25 25 H 0.96994 * 119.99247 * 359.97438 * 7 6 4 26 26 H 1.09001 * 110.51401 * 237.28945 * 16 14 12 27 27 H 1.08997 * 110.51421 * 359.97438 * 16 14 12 28 28 H 1.09006 * 110.37451 * 142.81191 * 17 16 14 29 29 H 1.09001 * 110.37279 * 265.02979 * 17 16 14 30 30 H 1.09004 * 110.33672 * 281.59181 * 19 18 17 31 31 H 1.08996 * 110.50487 * 159.18628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1262 2.8777 -1.6728 7 7 3.5535 3.6180 -0.6732 8 14 3.4371 3.4173 -3.4340 9 1 4.7322 2.8604 -3.9010 10 1 2.3418 2.9200 -4.3047 11 1 3.4846 4.9002 -3.4964 12 6 2.1389 -1.1672 0.0005 13 8 3.3483 -1.1693 -0.0902 14 6 1.3895 -2.4698 0.1139 15 1 0.4124 -2.3899 -0.3623 16 6 2.2061 -3.6206 -0.5155 17 6 2.4541 -4.5916 0.6602 18 8 1.3883 -4.3183 1.5956 19 6 1.2376 -2.8797 1.5956 20 1 -0.3633 -0.0944 -1.0234 21 1 -0.3634 -0.8389 0.5934 22 1 -0.3634 0.9335 0.4297 23 1 3.1500 1.1384 0.5139 24 1 1.6085 2.0284 0.5137 25 1 3.3917 3.3380 0.2413 26 1 1.6317 -4.1113 -1.3013 27 1 3.1515 -3.2474 -0.9090 28 1 2.4019 -5.6247 0.3166 29 1 3.4233 -4.3934 1.1180 30 1 2.0184 -2.4170 2.1993 31 1 0.2525 -2.5990 1.9679 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048626513.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = -86.221301 kcal Electronic energy + Delta-G solvation = -14592.707974 eV Core-core repulsion = 12067.104456 eV Total energy + Delta-G solvation = -2525.603518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05014 -38.04917 -35.04274 -32.98404 -31.95009 -29.36086 -27.42554 -25.80514 -23.63823 -22.79143 -21.39254 -18.56477 -17.27118 -16.84552 -16.28539 -15.35061 -15.26584 -14.88756 -14.04903 -13.71932 -13.43856 -12.91339 -12.49169 -12.42982 -11.95610 -11.93581 -11.41410 -11.37639 -11.11000 -10.93049 -10.65128 -10.59251 -10.13595 -9.83663 -9.17714 -9.05801 -8.40769 -7.68886 -6.41411 -4.13275 3.17040 3.42261 3.45797 3.60488 3.70570 4.02664 4.51506 4.61421 4.85028 4.94104 5.14119 5.28243 5.32238 5.38228 5.48738 5.66592 5.73270 5.77816 5.83081 5.98670 6.07890 6.12369 6.70033 6.75782 7.04966 7.33089 8.00128 8.20327 8.39986 8.74274 8.91926 9.56285 10.96142 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051587 B = 0.007536 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.642099 B = 3714.423239 C = 3883.538076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.235 3.765 4 C -0.606 4.606 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.910 5.910 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.512 3.488 13 O -0.536 6.536 14 C -0.147 4.147 15 H 0.099 0.901 16 C -0.143 4.143 17 C 0.047 3.953 18 O -0.377 6.377 19 C 0.064 3.936 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.023 0.977 25 H 0.267 0.733 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.115 -11.928 2.108 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.329 5.329 3 C 0.116 3.884 4 C -0.644 4.644 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.546 5.546 8 Si 0.903 3.097 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.169 4.169 15 H 0.118 0.882 16 C -0.181 4.181 17 C -0.029 4.029 18 O -0.296 6.296 19 C -0.013 4.013 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.914 -10.850 1.271 12.422 hybrid contribution -0.755 -0.970 0.689 1.409 sum -6.669 -11.820 1.960 13.713 Atomic orbital electron populations 1.21660 0.81128 1.01967 1.01124 1.47963 1.06245 1.07420 1.71274 1.19385 0.91890 0.78915 0.98253 1.22262 1.40725 1.09527 0.91924 0.93033 1.25831 0.93285 0.93289 1.06096 1.70782 1.44125 1.39623 1.00086 0.83464 0.76345 0.76188 0.73736 1.21326 1.21540 1.20862 1.20038 0.87916 0.84716 0.77552 1.90659 1.14177 1.86801 1.49660 1.22742 1.00997 0.94718 0.98400 0.88239 1.22915 1.02028 0.94651 0.98466 1.23429 0.91075 0.99546 0.88889 1.89103 1.55077 1.21580 1.63849 1.23292 1.02422 0.81617 0.94006 0.93063 0.92559 0.91086 0.94995 0.95965 0.92244 0.90517 0.88487 0.89081 0.91904 0.91703 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 9.87 59.85 0.59 1.93 16 2 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 3 C 0.24 6.14 4.48 -5.19 -0.02 6.12 16 4 C -0.61 -17.54 9.39 -34.44 -0.32 -17.86 16 5 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 6 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 7 N -0.91 -27.88 13.65 55.43 0.76 -27.12 16 8 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.51 10.65 6.69 -10.98 -0.07 10.57 16 13 O -0.54 -13.48 15.27 5.56 0.08 -13.39 16 14 C -0.15 -2.24 2.57 -90.20 -0.23 -2.47 16 15 H 0.10 1.32 6.71 -51.93 -0.35 0.97 16 16 C -0.14 -2.02 6.61 -25.17 -0.17 -2.18 16 17 C 0.05 0.60 7.64 37.93 0.29 0.89 16 18 O -0.38 -5.38 11.65 -35.23 -0.41 -5.79 16 19 C 0.06 0.88 7.02 37.93 0.27 1.15 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.68 6.26 -51.93 -0.33 0.36 16 22 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 23 H 0.03 0.93 7.36 -51.93 -0.38 0.54 16 24 H 0.02 0.58 7.72 -51.93 -0.40 0.18 16 25 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.59 6.82 -51.93 -0.35 1.24 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 31 H 0.10 1.09 7.89 -51.93 -0.41 0.68 16 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -33.95 260.42 -5.25 -39.19 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.23 Total: -2.92 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.23 Total: -1.38 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.23 Total: -40.36 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.33 Total: -19.18 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.95 -5.25 -39.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048626513.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.029 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds