Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00245 * 2 1 4 4 C 1.50704 * 109.47003 * 269.99494 * 3 2 1 5 5 H 1.07996 * 119.99617 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99784 * 179.97438 * 4 3 2 7 7 N 1.31522 * 120.00438 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46826 * 270.00685 * 8 6 4 10 10 H 1.48501 * 109.46892 * 29.99929 * 8 6 4 11 11 H 1.48491 * 109.47328 * 150.00429 * 8 6 4 12 12 C 1.34776 * 119.99936 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00183 * 175.04281 * 12 2 1 14 14 C 1.50707 * 119.99774 * 355.04081 * 12 2 1 15 15 H 1.08995 * 110.45878 * 32.19620 * 14 12 2 16 16 C 1.54506 * 110.50927 * 154.80055 * 14 12 2 17 17 C 1.54477 * 104.06280 * 118.64571 * 16 14 12 18 18 O 1.44416 * 104.80577 * 23.97922 * 17 16 14 19 19 C 1.44651 * 105.36744 * 319.56634 * 18 17 16 20 20 H 1.09006 * 109.46887 * 95.27116 * 1 2 3 21 21 H 1.08997 * 109.47540 * 215.27386 * 1 2 3 22 22 H 1.08999 * 109.47297 * 335.28051 * 1 2 3 23 23 H 1.09001 * 109.47482 * 149.99556 * 3 2 1 24 24 H 1.08999 * 109.47325 * 29.99514 * 3 2 1 25 25 H 0.96994 * 119.99247 * 359.97438 * 7 6 4 26 26 H 1.09001 * 110.51401 * 237.28945 * 16 14 12 27 27 H 1.08997 * 110.51421 * 359.97438 * 16 14 12 28 28 H 1.09006 * 110.37451 * 142.81191 * 17 16 14 29 29 H 1.09001 * 110.37279 * 265.02979 * 17 16 14 30 30 H 1.09004 * 110.33672 * 281.59181 * 19 18 17 31 31 H 1.08996 * 110.50487 * 159.18628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4489 1.7036 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1262 2.8777 -1.6728 7 7 3.5535 3.6180 -0.6732 8 14 3.4371 3.4173 -3.4340 9 1 4.7322 2.8604 -3.9010 10 1 2.3418 2.9200 -4.3047 11 1 3.4846 4.9002 -3.4964 12 6 2.1389 -1.1672 0.0005 13 8 3.3483 -1.1693 -0.0902 14 6 1.3895 -2.4698 0.1139 15 1 0.4124 -2.3899 -0.3623 16 6 2.2061 -3.6206 -0.5155 17 6 2.4541 -4.5916 0.6602 18 8 1.3883 -4.3183 1.5956 19 6 1.2376 -2.8797 1.5956 20 1 -0.3633 -0.0944 -1.0234 21 1 -0.3634 -0.8389 0.5934 22 1 -0.3634 0.9335 0.4297 23 1 3.1500 1.1384 0.5139 24 1 1.6085 2.0284 0.5137 25 1 3.3917 3.3380 0.2413 26 1 1.6317 -4.1113 -1.3013 27 1 3.1515 -3.2474 -0.9090 28 1 2.4019 -5.6247 0.3166 29 1 3.4233 -4.3934 1.1180 30 1 2.0184 -2.4170 2.1993 31 1 0.2525 -2.5990 1.9679 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048626513.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = -110.952439 kcal Electronic energy + Delta-G solvation = -14593.780397 eV Core-core repulsion = 12067.104456 eV Total energy + Delta-G solvation = -2526.675941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45599 -39.43291 -36.85311 -35.04233 -33.25569 -30.57848 -29.20171 -27.37598 -25.50823 -24.08135 -22.80914 -20.09751 -19.15831 -18.48445 -17.52715 -16.91006 -16.63540 -16.14852 -15.78629 -15.47099 -15.01875 -14.32544 -14.00677 -13.92930 -13.63958 -13.44688 -13.06035 -12.86077 -12.56013 -12.50909 -12.24588 -11.95934 -11.81457 -11.23718 -10.91228 -10.75106 -10.65137 -9.53665 -8.73010 -6.48889 1.47291 1.56735 1.58879 1.74887 2.15774 2.51122 2.90922 3.06561 3.43115 3.62748 3.78838 4.03297 4.18679 4.23276 4.30095 4.55290 4.63663 4.65228 4.70840 4.77202 4.85091 4.87598 4.96757 4.98682 5.49029 5.64749 5.77818 6.09705 6.41340 6.58354 7.21319 7.33920 8.62237 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051587 B = 0.007536 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.642099 B = 3714.423239 C = 3883.538076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.618 4.618 5 H 0.044 0.956 6 C -0.032 4.032 7 N -0.931 5.931 8 Si 1.121 2.879 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.274 1.274 12 C 0.503 3.497 13 O -0.593 6.593 14 C -0.137 4.137 15 H 0.132 0.868 16 C -0.144 4.144 17 C 0.048 3.952 18 O -0.380 6.380 19 C 0.067 3.933 20 H 0.060 0.940 21 H 0.101 0.899 22 H 0.074 0.926 23 H -0.009 1.009 24 H 0.023 0.977 25 H 0.256 0.744 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 -13.303 1.273 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.123 3.877 4 C -0.656 4.656 5 H 0.062 0.938 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.942 3.058 9 H -0.207 1.207 10 H -0.192 1.192 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.474 6.474 14 C -0.158 4.158 15 H 0.149 0.851 16 C -0.182 4.182 17 C -0.029 4.029 18 O -0.299 6.299 19 C -0.010 4.010 20 H 0.078 0.922 21 H 0.120 0.880 22 H 0.093 0.907 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.975 -12.252 0.457 14.626 hybrid contribution -0.128 -0.577 0.997 1.159 sum -8.103 -12.830 1.454 15.244 Atomic orbital electron populations 1.21995 0.77475 1.04256 1.02695 1.48040 1.08537 1.05927 1.71069 1.18938 0.90906 0.81424 0.96475 1.22560 1.40610 1.09532 0.92939 0.93777 1.27382 0.92585 0.93584 1.09455 1.70905 1.45538 1.40371 1.00007 0.82896 0.77132 0.76435 0.69379 1.20691 1.19160 1.19893 1.21074 0.87621 0.86242 0.75865 1.90627 1.16958 1.87793 1.51998 1.22785 1.01569 0.91353 1.00108 0.85058 1.22963 1.00901 0.94646 0.99724 1.23532 0.90358 1.00965 0.88016 1.89109 1.55256 1.21403 1.64151 1.23346 1.03632 0.81509 0.92549 0.92173 0.88028 0.90734 0.99052 0.95914 0.93505 0.87602 0.91515 0.85865 0.93033 0.93740 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 9.87 127.77 1.26 3.50 16 2 N -0.61 -25.58 2.86 -851.12 -2.43 -28.01 16 3 C 0.24 13.16 4.48 85.64 0.38 13.54 16 4 C -0.62 -36.36 9.39 25.60 0.24 -36.12 16 5 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 6 C -0.03 -1.88 5.46 84.65 0.46 -1.42 16 7 N -0.93 -58.26 13.65 21.45 0.29 -57.97 16 8 Si 1.12 51.58 29.90 68.60 2.05 53.63 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.50 20.92 6.69 87.66 0.59 21.51 16 13 O -0.59 -31.03 15.27 -3.02 -0.05 -31.08 16 14 C -0.14 -3.85 2.57 -10.52 -0.03 -3.88 16 15 H 0.13 2.88 6.71 -2.39 -0.02 2.87 16 16 C -0.14 -3.80 6.61 31.61 0.21 -3.59 16 17 C 0.05 1.11 7.64 72.48 0.55 1.66 16 18 O -0.38 -9.69 11.65 -148.98 -1.74 -11.43 16 19 C 0.07 1.67 7.02 72.48 0.51 2.18 16 20 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 21 H 0.10 2.01 6.26 -2.39 -0.01 1.99 16 22 H 0.07 2.10 7.83 -2.39 -0.02 2.08 16 23 H -0.01 -0.52 7.36 -2.39 -0.02 -0.54 16 24 H 0.02 1.21 7.72 -2.39 -0.02 1.20 16 25 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 26 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.20 6.82 -2.39 -0.02 2.18 16 28 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.30 7.86 -2.38 -0.02 1.28 16 31 H 0.13 2.36 7.89 -2.39 -0.02 2.34 16 Total: -1.00 -76.26 260.42 3.52 -72.74 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.21 Total: 4.71 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.18 Total: -2.61 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.14 Total: -85.97 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.78 Total: -42.50 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -76.26 3.52 -72.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048626513.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.210 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds