Wall clock time and date at job start Sun Mar 29 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99950 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47052 * 30.00452 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00325 * 3 2 1 7 7 C 1.37876 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46892 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46765 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46705 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99875 * 180.02562 * 12 11 10 14 14 C 1.53175 * 109.54266 * 274.55734 * 13 12 11 15 15 C 1.53094 * 109.16661 * 183.15200 * 14 13 12 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 0.96995 * 120.00059 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46946 * 59.99657 * 9 7 2 21 21 H 1.08993 * 109.46826 * 299.99594 * 9 7 2 22 22 H 1.08996 * 109.47345 * 60.00220 * 10 9 7 23 23 H 1.09000 * 109.46964 * 299.99555 * 10 9 7 24 24 H 1.08996 * 109.46865 * 60.00102 * 11 10 9 25 25 H 1.08993 * 109.47033 * 299.99961 * 11 10 9 26 26 H 1.00895 * 111.00578 * 56.04851 * 12 11 10 27 27 H 1.09004 * 109.61472 * 34.77220 * 13 12 11 28 28 H 1.09004 * 109.52259 * 303.05466 * 14 13 12 29 29 H 1.09006 * 109.52330 * 63.24299 * 14 13 12 30 30 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 31 31 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 32 32 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 33 33 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 34 34 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 35 35 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7347 -7.3950 0.0018 14 6 1.3891 -7.7904 1.4407 15 6 0.7307 -9.1725 1.4378 16 8 1.6133 -10.1178 0.8300 17 6 1.9339 -9.8250 -0.5315 18 6 2.6407 -8.4692 -0.6077 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8719 -3.6042 -0.8895 24 1 0.8534 -5.0451 -0.8886 25 1 0.8540 -5.0446 0.8913 26 1 3.0698 -6.0362 0.7831 27 1 0.8191 -7.3147 -0.5841 28 1 2.3000 -7.8222 2.0386 29 1 0.7000 -7.0595 1.8638 30 1 -0.2011 -9.1300 0.8736 31 1 0.5214 -9.4776 2.4630 32 1 1.0180 -9.7911 -1.1215 33 1 2.5913 -10.6003 -0.9252 34 1 2.8466 -8.2238 -1.6495 35 1 3.5769 -8.5147 -0.0513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:28 Heat of formation + Delta-G solvation = -73.620753 kcal Electronic energy + Delta-G solvation = -14098.049566 eV Core-core repulsion = 11708.825543 eV Total energy + Delta-G solvation = -2389.224023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55274 -36.47413 -33.91050 -32.18595 -31.21208 -29.94538 -26.23713 -23.86033 -23.58768 -22.10089 -20.69156 -19.81202 -16.51727 -16.28698 -16.13439 -15.31254 -14.86511 -14.63758 -14.41300 -13.95925 -13.69019 -13.00319 -12.56733 -12.23784 -11.74560 -11.58017 -11.47939 -11.32024 -11.00611 -10.80658 -10.57896 -10.56991 -10.35182 -9.81374 -9.68746 -9.29766 -9.04060 -8.33756 -8.15140 -5.98912 -4.01016 3.33003 3.38926 3.42648 3.72378 4.28101 4.48432 4.65769 4.76562 4.86941 5.08299 5.11440 5.33412 5.36960 5.43718 5.53337 5.56268 5.73024 5.77638 5.87348 5.93490 6.08149 6.14086 6.31583 6.72067 6.77385 7.03562 7.13742 7.33752 7.61700 7.69170 7.83982 8.01438 8.44823 9.06192 9.63033 11.12598 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.082111 B = 0.004502 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.921573 B = 6217.824620 C = 6359.084988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.085 3.915 14 C -0.187 4.187 15 C 0.065 3.935 16 O -0.386 6.386 17 C 0.060 3.940 18 C -0.143 4.143 19 H 0.260 0.740 20 H 0.016 0.984 21 H 0.013 0.987 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.339 0.661 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -17.548 0.889 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.315 5.315 13 C -0.026 4.026 14 C -0.226 4.226 15 C -0.012 4.012 16 O -0.305 6.305 17 C -0.017 4.017 18 C -0.181 4.181 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.032 0.968 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.156 0.844 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.161 -17.555 0.294 17.690 hybrid contribution -0.067 1.275 0.810 1.512 sum 2.095 -16.280 1.104 16.451 Atomic orbital electron populations 1.69965 1.06077 1.26560 1.51060 1.25030 0.94844 0.99268 0.95363 0.86592 0.79843 0.83445 0.78117 1.20644 1.21249 1.19872 1.21262 0.93065 0.91061 1.50334 0.92669 1.19066 0.94019 0.91410 0.97086 1.21629 0.99193 0.92995 1.00719 1.22160 0.94175 0.90842 0.99789 1.60644 1.20020 1.01015 1.49780 1.21602 0.96796 0.89975 0.94211 1.22967 1.02291 0.98059 0.99324 1.22508 0.91913 0.88382 0.98406 1.87904 1.66989 1.49383 1.26237 1.22618 0.99060 0.96941 0.83066 1.22189 0.99512 0.93925 1.02511 0.93040 0.96608 0.96825 0.93673 0.92556 0.91565 0.95768 0.84354 0.90588 0.90918 0.90764 0.93188 0.89057 0.93267 0.88880 0.90223 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 11 C 0.06 1.02 5.49 -3.82 -0.02 1.00 16 12 N -0.69 -10.08 6.26 -106.53 -0.67 -10.74 16 13 C 0.08 1.05 2.55 -67.53 -0.17 0.87 16 14 C -0.19 -2.10 5.39 -26.59 -0.14 -2.24 16 15 C 0.07 0.67 6.84 37.21 0.25 0.92 16 16 O -0.39 -4.48 10.76 -35.23 -0.38 -4.86 16 17 C 0.06 0.59 6.84 37.20 0.25 0.84 16 18 C -0.14 -1.55 5.75 -26.59 -0.15 -1.71 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 25 H 0.02 0.42 7.54 -51.93 -0.39 0.03 16 26 H 0.34 4.75 8.44 -39.29 -0.33 4.42 16 27 H 0.08 0.97 7.80 -51.93 -0.41 0.57 16 28 H 0.07 0.82 8.09 -51.93 -0.42 0.41 16 29 H 0.07 0.86 7.58 -51.93 -0.39 0.47 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 283.96 15.07 4.28 4.28 Total: -1.00 -30.49 283.96 -7.85 -38.35 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.13 Total: -1.34 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.67 Total: -16.01 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.07 Total: -37.28 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.49 -7.85 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.273 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds