Wall clock time and date at job start Sun Mar 29 2020 22:24:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86808 * 119.99950 * 2 1
4 4 H 1.48493 * 109.46844 * 270.00373 * 3 2 1
5 5 H 1.48499 * 109.47052 * 30.00452 * 3 2 1
6 6 H 1.48504 * 109.46936 * 150.00325 * 3 2 1
7 7 C 1.37876 * 120.00133 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99917 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99989 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.46892 * 179.97438 * 9 7 2
11 11 C 1.53009 * 109.46765 * 179.97438 * 10 9 7
12 12 N 1.46898 * 109.46705 * 180.02562 * 11 10 9
13 13 C 1.46901 * 110.99875 * 180.02562 * 12 11 10
14 14 C 1.53175 * 109.54266 * 274.55734 * 13 12 11
15 15 C 1.53094 * 109.16661 * 183.15200 * 14 13 12
16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13
17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14
18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15
19 19 H 0.96995 * 120.00059 * 359.97438 * 1 2 3
20 20 H 1.08996 * 109.46946 * 59.99657 * 9 7 2
21 21 H 1.08993 * 109.46826 * 299.99594 * 9 7 2
22 22 H 1.08996 * 109.47345 * 60.00220 * 10 9 7
23 23 H 1.09000 * 109.46964 * 299.99555 * 10 9 7
24 24 H 1.08996 * 109.46865 * 60.00102 * 11 10 9
25 25 H 1.08993 * 109.47033 * 299.99961 * 11 10 9
26 26 H 1.00895 * 111.00578 * 56.04851 * 12 11 10
27 27 H 1.09004 * 109.61472 * 34.77220 * 13 12 11
28 28 H 1.09004 * 109.52259 * 303.05466 * 14 13 12
29 29 H 1.09006 * 109.52330 * 63.24299 * 14 13 12
30 30 H 1.09006 * 109.47665 * 297.62062 * 15 14 13
31 31 H 1.08993 * 109.47955 * 177.58818 * 15 14 13
32 32 H 1.09002 * 109.48425 * 301.17758 * 17 16 15
33 33 H 1.09001 * 109.49443 * 181.15303 * 17 16 15
34 34 H 1.08997 * 109.52675 * 182.48845 * 18 17 16
35 35 H 1.08995 * 109.52428 * 62.29514 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5468 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6620 0.0005
11 6 1.4803 -4.9871 0.0012
12 7 2.4350 -6.1036 0.0018
13 6 1.7347 -7.3950 0.0018
14 6 1.3891 -7.7904 1.4407
15 6 0.7307 -9.1725 1.4378
16 8 1.6133 -10.1178 0.8300
17 6 1.9339 -9.8250 -0.5315
18 6 2.6407 -8.4692 -0.6077
19 1 -0.4850 0.8400 0.0004
20 1 0.6247 -2.5571 -0.8896
21 1 0.6242 -2.5567 0.8903
22 1 2.8720 -3.6043 0.8905
23 1 2.8719 -3.6042 -0.8895
24 1 0.8534 -5.0451 -0.8886
25 1 0.8540 -5.0446 0.8913
26 1 3.0698 -6.0362 0.7831
27 1 0.8191 -7.3147 -0.5841
28 1 2.3000 -7.8222 2.0386
29 1 0.7000 -7.0595 1.8638
30 1 -0.2011 -9.1300 0.8736
31 1 0.5214 -9.4776 2.4630
32 1 1.0180 -9.7911 -1.1215
33 1 2.5913 -10.6003 -0.9252
34 1 2.8466 -8.2238 -1.6495
35 1 3.5769 -8.5147 -0.0513
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049578416.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:24:28
Heat of formation + Delta-G solvation = -73.620753 kcal
Electronic energy + Delta-G solvation = -14098.049566 eV
Core-core repulsion = 11708.825543 eV
Total energy + Delta-G solvation = -2389.224023 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.55274 -36.47413 -33.91050 -32.18595 -31.21208 -29.94538 -26.23713 -23.86033
-23.58768 -22.10089 -20.69156 -19.81202 -16.51727 -16.28698 -16.13439 -15.31254
-14.86511 -14.63758 -14.41300 -13.95925 -13.69019 -13.00319 -12.56733 -12.23784
-11.74560 -11.58017 -11.47939 -11.32024 -11.00611 -10.80658 -10.57896 -10.56991
-10.35182 -9.81374 -9.68746 -9.29766 -9.04060 -8.33756 -8.15140 -5.98912
-4.01016 3.33003 3.38926 3.42648 3.72378 4.28101 4.48432 4.65769
4.76562 4.86941 5.08299 5.11440 5.33412 5.36960 5.43718 5.53337
5.56268 5.73024 5.77638 5.87348 5.93490 6.08149 6.14086 6.31583
6.72067 6.77385 7.03562 7.13742 7.33752 7.61700 7.69170 7.83982
8.01438 8.44823 9.06192 9.63033 11.12598
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.082111 B = 0.004502 C = 0.004402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 340.921573 B = 6217.824620 C = 6359.084988
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.056 3.944
3 Si 0.892 3.108
4 H -0.280 1.280
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.519 4.519
8 H 0.055 0.945
9 C 0.022 3.978
10 C -0.107 4.107
11 C 0.059 3.941
12 N -0.685 5.685
13 C 0.085 3.915
14 C -0.187 4.187
15 C 0.065 3.935
16 O -0.386 6.386
17 C 0.060 3.940
18 C -0.143 4.143
19 H 0.260 0.740
20 H 0.016 0.984
21 H 0.013 0.987
22 H 0.044 0.956
23 H 0.056 0.944
24 H 0.066 0.934
25 H 0.024 0.976
26 H 0.339 0.661
27 H 0.076 0.924
28 H 0.072 0.928
29 H 0.074 0.926
30 H 0.050 0.950
31 H 0.091 0.909
32 H 0.049 0.951
33 H 0.093 0.907
34 H 0.079 0.921
35 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.152 -17.548 0.889 17.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.557 4.557
8 H 0.073 0.927
9 C -0.016 4.016
10 C -0.145 4.145
11 C -0.070 4.070
12 N -0.315 5.315
13 C -0.026 4.026
14 C -0.226 4.226
15 C -0.012 4.012
16 O -0.305 6.305
17 C -0.017 4.017
18 C -0.181 4.181
19 H 0.070 0.930
20 H 0.034 0.966
21 H 0.032 0.968
22 H 0.063 0.937
23 H 0.074 0.926
24 H 0.084 0.916
25 H 0.042 0.958
26 H 0.156 0.844
27 H 0.094 0.906
28 H 0.091 0.909
29 H 0.092 0.908
30 H 0.068 0.932
31 H 0.109 0.891
32 H 0.067 0.933
33 H 0.111 0.889
34 H 0.098 0.902
35 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 2.161 -17.555 0.294 17.690
hybrid contribution -0.067 1.275 0.810 1.512
sum 2.095 -16.280 1.104 16.451
Atomic orbital electron populations
1.69965 1.06077 1.26560 1.51060 1.25030 0.94844 0.99268 0.95363
0.86592 0.79843 0.83445 0.78117 1.20644 1.21249 1.19872 1.21262
0.93065 0.91061 1.50334 0.92669 1.19066 0.94019 0.91410 0.97086
1.21629 0.99193 0.92995 1.00719 1.22160 0.94175 0.90842 0.99789
1.60644 1.20020 1.01015 1.49780 1.21602 0.96796 0.89975 0.94211
1.22967 1.02291 0.98059 0.99324 1.22508 0.91913 0.88382 0.98406
1.87904 1.66989 1.49383 1.26237 1.22618 0.99060 0.96941 0.83066
1.22189 0.99512 0.93925 1.02511 0.93040 0.96608 0.96825 0.93673
0.92556 0.91565 0.95768 0.84354 0.90588 0.90918 0.90764 0.93188
0.89057 0.93267 0.88880 0.90223 0.91095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16
4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16
8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16
11 C 0.06 1.02 5.49 -3.82 -0.02 1.00 16
12 N -0.69 -10.08 6.26 -106.53 -0.67 -10.74 16
13 C 0.08 1.05 2.55 -67.53 -0.17 0.87 16
14 C -0.19 -2.10 5.39 -26.59 -0.14 -2.24 16
15 C 0.07 0.67 6.84 37.21 0.25 0.92 16
16 O -0.39 -4.48 10.76 -35.23 -0.38 -4.86 16
17 C 0.06 0.59 6.84 37.20 0.25 0.84 16
18 C -0.14 -1.55 5.75 -26.59 -0.15 -1.71 16
19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
22 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16
23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
24 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16
25 H 0.02 0.42 7.54 -51.93 -0.39 0.03 16
26 H 0.34 4.75 8.44 -39.29 -0.33 4.42 16
27 H 0.08 0.97 7.80 -51.93 -0.41 0.57 16
28 H 0.07 0.82 8.09 -51.93 -0.42 0.41 16
29 H 0.07 0.86 7.58 -51.93 -0.39 0.47 16
30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 283.96 15.07 4.28 4.28
Total: -1.00 -30.49 283.96 -7.85 -38.35
By element:
Atomic # 1 Polarization: 4.79 SS G_CDS: -6.13 Total: -1.34 kcal
Atomic # 6 Polarization: -15.34 SS G_CDS: -0.67 Total: -16.01 kcal
Atomic # 7 Polarization: -37.35 SS G_CDS: 0.07 Total: -37.28 kcal
Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.86 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -30.49 -7.85 -38.35 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049578416.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.273 kcal
(2) G-P(sol) polarization free energy of solvation -30.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds