Wall clock time and date at job start Sun Mar 29 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99950 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47052 * 30.00452 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00325 * 3 2 1 7 7 C 1.37876 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46892 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46765 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46705 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99875 * 180.02562 * 12 11 10 14 14 C 1.53175 * 109.54266 * 274.55734 * 13 12 11 15 15 C 1.53094 * 109.16661 * 183.15200 * 14 13 12 16 16 O 1.42898 * 109.41211 * 57.60371 * 15 14 13 17 17 C 1.42897 * 114.10001 * 298.84343 * 16 15 14 18 18 C 1.53089 * 109.41656 * 61.16248 * 17 16 15 19 19 H 0.96995 * 120.00059 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46946 * 59.99657 * 9 7 2 21 21 H 1.08993 * 109.46826 * 299.99594 * 9 7 2 22 22 H 1.08996 * 109.47345 * 60.00220 * 10 9 7 23 23 H 1.09000 * 109.46964 * 299.99555 * 10 9 7 24 24 H 1.08996 * 109.46865 * 60.00102 * 11 10 9 25 25 H 1.08993 * 109.47033 * 299.99961 * 11 10 9 26 26 H 1.00895 * 111.00578 * 56.04851 * 12 11 10 27 27 H 1.09004 * 109.61472 * 34.77220 * 13 12 11 28 28 H 1.09004 * 109.52259 * 303.05466 * 14 13 12 29 29 H 1.09006 * 109.52330 * 63.24299 * 14 13 12 30 30 H 1.09006 * 109.47665 * 297.62062 * 15 14 13 31 31 H 1.08993 * 109.47955 * 177.58818 * 15 14 13 32 32 H 1.09002 * 109.48425 * 301.17758 * 17 16 15 33 33 H 1.09001 * 109.49443 * 181.15303 * 17 16 15 34 34 H 1.08997 * 109.52675 * 182.48845 * 18 17 16 35 35 H 1.08995 * 109.52428 * 62.29514 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 1.7347 -7.3950 0.0018 14 6 1.3891 -7.7904 1.4407 15 6 0.7307 -9.1725 1.4378 16 8 1.6133 -10.1178 0.8300 17 6 1.9339 -9.8250 -0.5315 18 6 2.6407 -8.4692 -0.6077 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8719 -3.6042 -0.8895 24 1 0.8534 -5.0451 -0.8886 25 1 0.8540 -5.0446 0.8913 26 1 3.0698 -6.0362 0.7831 27 1 0.8191 -7.3147 -0.5841 28 1 2.3000 -7.8222 2.0386 29 1 0.7000 -7.0595 1.8638 30 1 -0.2011 -9.1300 0.8736 31 1 0.5214 -9.4776 2.4630 32 1 1.0180 -9.7911 -1.1215 33 1 2.5913 -10.6003 -0.9252 34 1 2.8466 -8.2238 -1.6495 35 1 3.5769 -8.5147 -0.0513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:28 Heat of formation + Delta-G solvation = -94.207838 kcal Electronic energy + Delta-G solvation = -14098.942289 eV Core-core repulsion = 11708.825543 eV Total energy + Delta-G solvation = -2390.116746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44947 -37.71506 -35.71640 -33.90153 -32.05146 -31.45858 -28.00602 -25.21420 -24.46396 -23.59329 -22.15661 -21.07364 -18.49727 -17.41567 -16.95301 -16.63555 -16.44916 -15.91457 -15.68344 -15.09764 -14.88769 -14.42388 -14.09616 -13.57945 -13.43785 -13.18692 -12.74709 -12.48242 -12.34487 -12.32933 -12.23975 -11.90539 -11.58253 -11.46770 -11.28860 -11.04442 -10.57024 -10.55935 -9.34565 -8.21105 -6.32334 1.39867 1.41382 1.52585 2.40540 2.93414 3.12096 3.16965 3.74270 3.88246 4.02457 4.15943 4.25783 4.28520 4.37371 4.54010 4.54480 4.67555 4.74115 4.78167 4.88677 4.94754 5.07529 5.10146 5.14981 5.23643 5.26716 5.50975 5.73315 5.84480 6.05673 6.24496 6.26183 6.44541 6.84506 7.37136 8.90898 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.082111 B = 0.004502 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.921573 B = 6217.824620 C = 6359.084988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.686 5.686 13 C 0.082 3.918 14 C -0.182 4.182 15 C 0.065 3.935 16 O -0.401 6.401 17 C 0.060 3.940 18 C -0.137 4.137 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.009 1.009 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.344 0.656 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -18.058 0.946 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.056 4.056 12 N -0.316 5.316 13 C -0.028 4.028 14 C -0.221 4.221 15 C -0.012 4.012 16 O -0.320 6.320 17 C -0.017 4.017 18 C -0.175 4.175 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.010 0.990 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.162 0.838 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.116 -18.089 0.351 18.358 hybrid contribution -0.383 1.400 0.785 1.650 sum 2.733 -16.688 1.136 16.949 Atomic orbital electron populations 1.70094 1.07824 1.27809 1.51720 1.25993 0.95783 1.03407 0.94651 0.85433 0.78660 0.78330 0.78544 1.19729 1.20628 1.18740 1.21704 0.93543 0.92434 1.50557 0.92276 1.18973 0.94427 0.93129 0.94755 1.21383 0.98039 0.92994 1.00690 1.21845 0.94010 0.90192 0.99548 1.60581 1.19614 1.01194 1.50199 1.21688 0.96854 0.89109 0.95166 1.22896 1.02235 0.98708 0.98296 1.22585 0.91828 0.87435 0.99372 1.87892 1.67262 1.49777 1.27083 1.22734 0.99737 0.96663 0.82570 1.22136 0.99089 0.94007 1.02297 0.92737 0.99051 0.99040 0.93165 0.92930 0.92136 0.95788 0.83794 0.91028 0.91000 0.91329 0.92463 0.87698 0.92416 0.87081 0.90110 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.92 5.41 30.60 0.17 -3.75 16 11 C 0.07 2.53 5.49 86.31 0.47 3.00 16 12 N -0.69 -19.46 6.26 -490.95 -3.07 -22.53 16 13 C 0.08 1.92 2.55 45.03 0.11 2.03 16 14 C -0.18 -3.84 5.39 30.68 0.17 -3.68 16 15 C 0.07 1.21 6.84 72.01 0.49 1.70 16 16 O -0.40 -8.48 10.76 -148.98 -1.60 -10.09 16 17 C 0.06 1.04 6.84 72.01 0.49 1.53 16 18 C -0.14 -2.74 5.75 30.68 0.18 -2.56 16 19 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 20 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 25 H 0.02 0.83 7.54 -2.39 -0.02 0.81 16 26 H 0.34 9.21 8.44 -89.70 -0.76 8.46 16 27 H 0.07 1.75 7.80 -2.38 -0.02 1.73 16 28 H 0.07 1.53 8.09 -2.38 -0.02 1.51 16 29 H 0.07 1.52 7.58 -2.38 -0.02 1.51 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.45 283.96 0.84 -63.61 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.28 Total: 10.70 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 2.93 Total: -31.20 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.79 Total: -79.73 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.60 Total: -10.09 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.45 0.84 -63.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.601 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds