Wall clock time and date at job start Sun Mar 29 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99977 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99958 * 3 2 1 5 5 H 1.48493 * 109.47257 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46988 * 150.00634 * 3 2 1 7 7 C 1.37884 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47324 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47307 * 175.13465 * 11 10 9 13 13 C 1.47843 * 110.99972 * 294.25237 * 12 11 10 14 14 C 1.54909 * 104.89478 * 213.57791 * 13 12 11 15 15 C 1.55438 * 101.51892 * 37.06592 * 14 13 12 16 16 C 1.47438 * 111.00024 * 173.41060 * 12 11 10 17 17 H 1.09005 * 109.88467 * 242.66142 * 16 12 11 18 18 C 1.52999 * 109.88952 * 3.68583 * 16 12 11 19 19 O 1.42897 * 109.46768 * 66.16439 * 18 16 12 20 20 H 0.96998 * 120.00195 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47006 * 59.99548 * 9 7 2 22 22 H 1.09007 * 109.47142 * 300.00330 * 9 7 2 23 23 H 1.09000 * 109.46986 * 59.99678 * 10 9 7 24 24 H 1.09004 * 109.46673 * 299.99752 * 10 9 7 25 25 H 1.08999 * 109.46851 * 55.13464 * 11 10 9 26 26 H 1.09004 * 109.46795 * 295.13753 * 11 10 9 27 27 H 1.08997 * 110.37535 * 332.46641 * 13 12 11 28 28 H 1.09000 * 110.37420 * 94.69401 * 13 12 11 29 29 H 1.08997 * 110.99179 * 155.21440 * 14 13 12 30 30 H 1.09002 * 110.99005 * 279.03428 * 14 13 12 31 31 H 1.09002 * 110.69019 * 205.97545 * 15 14 13 32 32 H 1.08995 * 110.68761 * 82.75659 * 15 14 13 33 33 H 1.09003 * 109.47007 * 186.15909 * 18 16 12 34 34 H 1.08999 * 109.47162 * 306.16060 * 18 16 12 35 35 H 0.96698 * 114.00049 * 184.98519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9872 0.0001 12 7 2.4304 -6.1013 -0.1174 13 6 3.1106 -6.0813 -1.4299 14 6 3.3396 -7.5723 -1.7823 15 6 2.0401 -8.2244 -1.2326 16 6 1.7460 -7.3980 0.0371 17 1 2.1300 -7.9177 0.9149 18 6 0.2389 -7.1771 0.1810 19 8 -0.2838 -6.6487 -1.0395 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8719 -3.6044 -0.8906 25 1 0.7896 -5.0083 -0.8429 26 1 0.9209 -5.0832 0.9307 27 1 2.4763 -5.6074 -2.1789 28 1 4.0640 -5.5583 -1.3553 29 1 3.4223 -7.7105 -2.8604 30 1 4.2194 -7.9637 -1.2715 31 1 2.2113 -9.2709 -0.9803 32 1 1.2269 -8.1282 -1.9520 33 1 -0.2478 -8.1267 0.4036 34 1 0.0506 -6.4734 0.9918 35 1 -1.2204 -6.4123 -0.9965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:51 Heat of formation + Delta-G solvation = -55.473930 kcal Electronic energy + Delta-G solvation = -14726.044735 eV Core-core repulsion = 12337.607618 eV Total energy + Delta-G solvation = -2388.437118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53665 -35.97848 -34.20602 -32.31029 -30.35160 -29.65428 -25.99777 -24.76582 -22.96431 -21.23939 -20.00692 -19.10046 -17.53444 -16.25947 -15.60283 -15.34830 -14.68048 -14.37989 -14.31376 -13.38209 -12.84465 -12.74504 -12.28293 -12.14775 -11.86495 -11.31588 -11.05240 -10.92353 -10.73644 -10.70274 -10.56701 -10.45495 -10.24959 -9.92968 -9.41018 -9.23173 -8.96669 -8.28305 -7.80369 -5.94149 -3.95498 3.35856 3.41569 3.45886 4.23237 4.33532 4.51905 4.87228 4.90654 5.01938 5.34525 5.37747 5.41614 5.46393 5.67226 5.80335 5.89359 5.94285 6.02878 6.11064 6.22648 6.35302 6.43565 6.59226 6.86689 6.92880 7.23080 7.43772 7.58838 7.67034 7.76658 7.93124 8.07674 8.52034 9.11923 9.68018 11.17413 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050122 B = 0.006368 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.501720 B = 4396.187122 C = 4740.080417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.039 3.961 12 N -0.523 5.523 13 C 0.047 3.953 14 C -0.129 4.129 15 C -0.134 4.134 16 C 0.070 3.930 17 H 0.090 0.910 18 C 0.055 3.945 19 O -0.564 6.564 20 H 0.259 0.741 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -15.939 -1.412 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.088 4.088 12 N -0.248 5.248 13 C -0.080 4.080 14 C -0.167 4.167 15 C -0.172 4.172 16 C -0.038 4.038 17 H 0.108 0.892 18 C -0.023 4.023 19 O -0.369 6.369 20 H 0.069 0.931 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.181 -15.853 -1.195 16.047 hybrid contribution -0.797 0.973 -0.327 1.300 sum 1.385 -14.879 -1.522 15.021 Atomic orbital electron populations 1.69970 1.06046 1.26439 1.51316 1.25030 0.94843 0.99203 0.95483 0.86604 0.79884 0.83533 0.78055 1.20718 1.21274 1.19877 1.21289 0.93061 0.91142 1.49969 0.92745 1.19052 0.94037 0.91417 0.96884 1.21644 0.99080 0.93214 1.00418 1.22761 0.94307 0.90463 1.01290 1.63790 1.28717 1.01574 1.30684 1.22975 0.99218 0.95641 0.90212 1.22734 0.97610 0.95974 1.00428 1.22797 0.98290 0.98513 0.97603 1.22575 0.90713 0.91948 0.98597 0.89217 1.22735 0.94989 0.97189 0.87396 1.86546 1.29920 1.85193 1.35284 0.93127 0.96835 0.96880 0.93242 0.93669 0.91951 0.91975 0.93242 0.90666 0.91314 0.91228 0.91722 0.90306 0.93954 0.92200 0.77578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.35 5.22 -26.73 -0.14 -2.49 16 11 C 0.04 0.72 3.61 -3.83 -0.01 0.71 16 12 N -0.52 -8.61 5.19 -223.36 -1.16 -9.77 16 13 C 0.05 0.73 5.55 -2.30 -0.01 0.72 16 14 C -0.13 -1.59 7.10 -24.43 -0.17 -1.77 16 15 C -0.13 -1.61 6.37 -24.75 -0.16 -1.77 16 16 C 0.07 0.95 3.84 -66.73 -0.26 0.69 16 17 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.06 0.69 6.00 37.16 0.22 0.91 16 19 O -0.56 -7.51 9.85 -35.23 -0.35 -7.86 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 25 H 0.06 1.22 5.56 -51.93 -0.29 0.93 16 26 H 0.06 1.14 6.14 -51.93 -0.32 0.82 16 27 H 0.05 0.84 7.68 -51.93 -0.40 0.44 16 28 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.78 6.02 -51.93 -0.31 0.47 16 35 H 0.38 3.64 9.12 45.56 0.42 4.05 16 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -32.03 274.33 -7.72 -39.75 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.98 Total: -0.10 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.08 Total: -16.48 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.42 Total: -36.63 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.35 Total: -7.86 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.03 -7.72 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.726 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds