Wall clock time and date at job start Sun Mar 29 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99977 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99958 * 3 2 1 5 5 H 1.48493 * 109.47257 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46988 * 150.00634 * 3 2 1 7 7 C 1.37884 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47324 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47307 * 175.13465 * 11 10 9 13 13 C 1.47843 * 110.99972 * 294.25237 * 12 11 10 14 14 C 1.54909 * 104.89478 * 213.57791 * 13 12 11 15 15 C 1.55438 * 101.51892 * 37.06592 * 14 13 12 16 16 C 1.47438 * 111.00024 * 173.41060 * 12 11 10 17 17 H 1.09005 * 109.88467 * 242.66142 * 16 12 11 18 18 C 1.52999 * 109.88952 * 3.68583 * 16 12 11 19 19 O 1.42897 * 109.46768 * 66.16439 * 18 16 12 20 20 H 0.96998 * 120.00195 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47006 * 59.99548 * 9 7 2 22 22 H 1.09007 * 109.47142 * 300.00330 * 9 7 2 23 23 H 1.09000 * 109.46986 * 59.99678 * 10 9 7 24 24 H 1.09004 * 109.46673 * 299.99752 * 10 9 7 25 25 H 1.08999 * 109.46851 * 55.13464 * 11 10 9 26 26 H 1.09004 * 109.46795 * 295.13753 * 11 10 9 27 27 H 1.08997 * 110.37535 * 332.46641 * 13 12 11 28 28 H 1.09000 * 110.37420 * 94.69401 * 13 12 11 29 29 H 1.08997 * 110.99179 * 155.21440 * 14 13 12 30 30 H 1.09002 * 110.99005 * 279.03428 * 14 13 12 31 31 H 1.09002 * 110.69019 * 205.97545 * 15 14 13 32 32 H 1.08995 * 110.68761 * 82.75659 * 15 14 13 33 33 H 1.09003 * 109.47007 * 186.15909 * 18 16 12 34 34 H 1.08999 * 109.47162 * 306.16060 * 18 16 12 35 35 H 0.96698 * 114.00049 * 184.98519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9872 0.0001 12 7 2.4304 -6.1013 -0.1174 13 6 3.1106 -6.0813 -1.4299 14 6 3.3396 -7.5723 -1.7823 15 6 2.0401 -8.2244 -1.2326 16 6 1.7460 -7.3980 0.0371 17 1 2.1300 -7.9177 0.9149 18 6 0.2389 -7.1771 0.1810 19 8 -0.2838 -6.6487 -1.0395 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8719 -3.6044 -0.8906 25 1 0.7896 -5.0083 -0.8429 26 1 0.9209 -5.0832 0.9307 27 1 2.4763 -5.6074 -2.1789 28 1 4.0640 -5.5583 -1.3553 29 1 3.4223 -7.7105 -2.8604 30 1 4.2194 -7.9637 -1.2715 31 1 2.2113 -9.2709 -0.9803 32 1 1.2269 -8.1282 -1.9520 33 1 -0.2478 -8.1267 0.4036 34 1 0.0506 -6.4734 0.9918 35 1 -1.2204 -6.4123 -0.9965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:51 Heat of formation + Delta-G solvation = -79.115480 kcal Electronic energy + Delta-G solvation = -14727.069910 eV Core-core repulsion = 12337.607618 eV Total energy + Delta-G solvation = -2389.462292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.69471 -37.04012 -36.10558 -34.19773 -31.73048 -31.01813 -27.88770 -25.81303 -24.76174 -22.67680 -21.50234 -20.38152 -18.54921 -18.46668 -16.86278 -16.53805 -16.38410 -16.09741 -15.61020 -14.52758 -14.47130 -14.17447 -13.79206 -13.68777 -13.31252 -13.00007 -12.83000 -12.46899 -12.26105 -12.10647 -11.99106 -11.61165 -11.56627 -11.51704 -11.34326 -11.05015 -10.77522 -10.55286 -9.09310 -8.20878 -6.32047 1.38822 1.40731 1.52151 2.40504 3.06606 3.11723 3.36707 3.82229 3.85225 4.00938 4.27004 4.33793 4.41793 4.48958 4.57551 4.66046 4.73300 4.83422 4.98604 5.00372 5.06352 5.11024 5.15494 5.20638 5.28717 5.46987 5.51695 5.74765 5.85038 6.15202 6.18002 6.30735 6.83400 6.84166 7.36943 8.91125 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050122 B = 0.006368 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.501720 B = 4396.187122 C = 4740.080417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.092 4.092 11 C 0.055 3.945 12 N -0.533 5.533 13 C 0.041 3.959 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.061 3.939 17 H 0.106 0.894 18 C 0.055 3.945 19 O -0.583 6.583 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.009 1.009 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -16.829 -1.350 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.130 4.130 11 C -0.072 4.072 12 N -0.257 5.257 13 C -0.087 4.087 14 C -0.159 4.159 15 C -0.165 4.165 16 C -0.047 4.047 17 H 0.124 0.876 18 C -0.023 4.023 19 O -0.391 6.391 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.010 0.990 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.071 -16.763 -1.133 17.079 hybrid contribution -1.110 1.223 -0.346 1.687 sum 1.961 -15.540 -1.479 15.733 Atomic orbital electron populations 1.70095 1.07763 1.27801 1.51658 1.25996 0.95830 1.03365 0.94612 0.85428 0.78650 0.78300 0.78564 1.19684 1.20400 1.18866 1.21695 0.93425 0.92551 1.50650 0.92592 1.18920 0.94261 0.92956 0.94532 1.21417 0.97988 0.93699 0.99855 1.22443 0.93968 0.89747 1.01080 1.63720 1.28499 1.02246 1.31263 1.23014 0.98285 0.98061 0.89340 1.22721 0.98377 0.93256 1.01523 1.22763 0.97572 0.99723 0.96423 1.22792 0.91283 0.90517 1.00080 0.87604 1.22738 0.94661 0.98246 0.86621 1.86497 1.31326 1.85444 1.35866 0.92705 0.99307 0.99034 0.93736 0.94051 0.92864 0.91763 0.95396 0.91317 0.89994 0.89865 0.88965 0.91381 0.91038 0.93337 0.75991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.65 9.11 25.60 0.23 -32.42 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.73 4.97 29.85 0.15 1.88 16 10 C -0.09 -4.18 5.22 30.59 0.16 -4.02 16 11 C 0.06 2.09 3.61 86.30 0.31 2.40 16 12 N -0.53 -17.13 5.19 -860.56 -4.47 -21.60 16 13 C 0.04 1.25 5.55 86.77 0.48 1.73 16 14 C -0.12 -2.70 7.10 32.09 0.23 -2.47 16 15 C -0.13 -2.71 6.37 31.88 0.20 -2.51 16 16 C 0.06 1.52 3.84 45.26 0.17 1.69 16 17 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 18 C 0.06 1.29 6.00 71.98 0.43 1.72 16 19 O -0.58 -15.14 9.85 -148.98 -1.47 -16.61 16 20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 22 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.04 1.89 7.20 -2.39 -0.02 1.87 16 25 H 0.05 2.13 5.56 -2.39 -0.01 2.11 16 26 H 0.06 2.39 6.14 -2.38 -0.01 2.37 16 27 H 0.03 0.96 7.68 -2.39 -0.02 0.94 16 28 H 0.07 2.13 8.10 -2.39 -0.02 2.12 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.63 6.92 -2.39 -0.02 1.61 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.23 6.02 -2.39 -0.01 1.21 16 35 H 0.39 7.37 9.12 -74.06 -0.68 6.70 16 Total: -1.00 -68.75 274.33 -0.41 -69.15 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.38 Total: 10.92 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.83 Total: -31.57 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -4.18 Total: -79.45 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.47 Total: -16.61 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.75 -0.41 -69.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.964 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds