Wall clock time and date at job start Sun Mar 29 2020 22:22:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86797 * 119.99977 * 2 1
4 4 H 1.48499 * 109.46831 * 269.99958 * 3 2 1
5 5 H 1.48493 * 109.47257 * 30.00210 * 3 2 1
6 6 H 1.48499 * 109.46988 * 150.00634 * 3 2 1
7 7 C 1.37884 * 119.99894 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99667 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00070 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47266 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47324 * 179.97438 * 10 9 7
12 12 N 1.46896 * 109.47307 * 175.13465 * 11 10 9
13 13 C 1.47843 * 110.99972 * 294.25237 * 12 11 10
14 14 C 1.54909 * 104.89478 * 213.57791 * 13 12 11
15 15 C 1.55438 * 101.51892 * 37.06592 * 14 13 12
16 16 C 1.47438 * 111.00024 * 173.41060 * 12 11 10
17 17 H 1.09005 * 109.88467 * 242.66142 * 16 12 11
18 18 C 1.52999 * 109.88952 * 3.68583 * 16 12 11
19 19 O 1.42897 * 109.46768 * 66.16439 * 18 16 12
20 20 H 0.96998 * 120.00195 * 359.97438 * 1 2 3
21 21 H 1.09002 * 109.47006 * 59.99548 * 9 7 2
22 22 H 1.09007 * 109.47142 * 300.00330 * 9 7 2
23 23 H 1.09000 * 109.46986 * 59.99678 * 10 9 7
24 24 H 1.09004 * 109.46673 * 299.99752 * 10 9 7
25 25 H 1.08999 * 109.46851 * 55.13464 * 11 10 9
26 26 H 1.09004 * 109.46795 * 295.13753 * 11 10 9
27 27 H 1.08997 * 110.37535 * 332.46641 * 13 12 11
28 28 H 1.09000 * 110.37420 * 94.69401 * 13 12 11
29 29 H 1.08997 * 110.99179 * 155.21440 * 14 13 12
30 30 H 1.09002 * 110.99005 * 279.03428 * 14 13 12
31 31 H 1.09002 * 110.69019 * 205.97545 * 15 14 13
32 32 H 1.08995 * 110.68761 * 82.75659 * 15 14 13
33 33 H 1.09003 * 109.47007 * 186.15909 * 18 16 12
34 34 H 1.08999 * 109.47162 * 306.16060 * 18 16 12
35 35 H 0.96698 * 114.00049 * 184.98519 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.6999
7 6 2.0046 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 6 2.2453 -3.6622 -0.0005
11 6 1.4803 -4.9872 0.0001
12 7 2.4304 -6.1013 -0.1174
13 6 3.1106 -6.0813 -1.4299
14 6 3.3396 -7.5723 -1.7823
15 6 2.0401 -8.2244 -1.2326
16 6 1.7460 -7.3980 0.0371
17 1 2.1300 -7.9177 0.9149
18 6 0.2389 -7.1771 0.1810
19 8 -0.2838 -6.6487 -1.0395
20 1 -0.4850 0.8400 0.0004
21 1 0.6240 -2.5567 -0.8903
22 1 0.6247 -2.5571 0.8897
23 1 2.8719 -3.6044 0.8894
24 1 2.8719 -3.6044 -0.8906
25 1 0.7896 -5.0083 -0.8429
26 1 0.9209 -5.0832 0.9307
27 1 2.4763 -5.6074 -2.1789
28 1 4.0640 -5.5583 -1.3553
29 1 3.4223 -7.7105 -2.8604
30 1 4.2194 -7.9637 -1.2715
31 1 2.2113 -9.2709 -0.9803
32 1 1.2269 -8.1282 -1.9520
33 1 -0.2478 -8.1267 0.4036
34 1 0.0506 -6.4734 0.9918
35 1 -1.2204 -6.4123 -0.9965
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000049579425.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:22:51
Heat of formation + Delta-G solvation = -79.115480 kcal
Electronic energy + Delta-G solvation = -14727.069910 eV
Core-core repulsion = 12337.607618 eV
Total energy + Delta-G solvation = -2389.462292 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.69471 -37.04012 -36.10558 -34.19773 -31.73048 -31.01813 -27.88770 -25.81303
-24.76174 -22.67680 -21.50234 -20.38152 -18.54921 -18.46668 -16.86278 -16.53805
-16.38410 -16.09741 -15.61020 -14.52758 -14.47130 -14.17447 -13.79206 -13.68777
-13.31252 -13.00007 -12.83000 -12.46899 -12.26105 -12.10647 -11.99106 -11.61165
-11.56627 -11.51704 -11.34326 -11.05015 -10.77522 -10.55286 -9.09310 -8.20878
-6.32047 1.38822 1.40731 1.52151 2.40504 3.06606 3.11723 3.36707
3.82229 3.85225 4.00938 4.27004 4.33793 4.41793 4.48958 4.57551
4.66046 4.73300 4.83422 4.98604 5.00372 5.06352 5.11024 5.15494
5.20638 5.28717 5.46987 5.51695 5.74765 5.85038 6.15202 6.18002
6.30735 6.83400 6.84166 7.36943 8.91125
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.050122 B = 0.006368 C = 0.005906
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 558.501720 B = 4396.187122 C = 4740.080417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.000 4.000
3 Si 0.966 3.034
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.264 1.264
7 C -0.545 4.545
8 H 0.056 0.944
9 C 0.031 3.969
10 C -0.092 4.092
11 C 0.055 3.945
12 N -0.533 5.533
13 C 0.041 3.959
14 C -0.121 4.121
15 C -0.127 4.127
16 C 0.061 3.939
17 H 0.106 0.894
18 C 0.055 3.945
19 O -0.583 6.583
20 H 0.264 0.736
21 H -0.011 1.011
22 H -0.009 1.009
23 H 0.044 0.956
24 H 0.041 0.959
25 H 0.053 0.947
26 H 0.064 0.936
27 H 0.028 0.972
28 H 0.068 0.932
29 H 0.081 0.919
30 H 0.083 0.917
31 H 0.092 0.908
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.048 0.952
35 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.246 -16.829 -1.350 17.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.198 4.198
3 Si 0.791 3.209
4 H -0.197 1.197
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.583 4.583
8 H 0.074 0.926
9 C -0.007 4.007
10 C -0.130 4.130
11 C -0.072 4.072
12 N -0.257 5.257
13 C -0.087 4.087
14 C -0.159 4.159
15 C -0.165 4.165
16 C -0.047 4.047
17 H 0.124 0.876
18 C -0.023 4.023
19 O -0.391 6.391
20 H 0.073 0.927
21 H 0.007 0.993
22 H 0.010 0.990
23 H 0.063 0.937
24 H 0.059 0.941
25 H 0.071 0.929
26 H 0.082 0.918
27 H 0.046 0.954
28 H 0.087 0.913
29 H 0.100 0.900
30 H 0.101 0.899
31 H 0.110 0.890
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.067 0.933
35 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges 3.071 -16.763 -1.133 17.079
hybrid contribution -1.110 1.223 -0.346 1.687
sum 1.961 -15.540 -1.479 15.733
Atomic orbital electron populations
1.70095 1.07763 1.27801 1.51658 1.25996 0.95830 1.03365 0.94612
0.85428 0.78650 0.78300 0.78564 1.19684 1.20400 1.18866 1.21695
0.93425 0.92551 1.50650 0.92592 1.18920 0.94261 0.92956 0.94532
1.21417 0.97988 0.93699 0.99855 1.22443 0.93968 0.89747 1.01080
1.63720 1.28499 1.02246 1.31263 1.23014 0.98285 0.98061 0.89340
1.22721 0.98377 0.93256 1.01523 1.22763 0.97572 0.99723 0.96423
1.22792 0.91283 0.90517 1.00080 0.87604 1.22738 0.94661 0.98246
0.86621 1.86497 1.31326 1.85444 1.35866 0.92705 0.99307 0.99034
0.93736 0.94051 0.92864 0.91763 0.95396 0.91317 0.89994 0.89865
0.88965 0.91381 0.91038 0.93337 0.75991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16
2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16
3 Si 0.97 45.54 29.54 68.60 2.03 47.56 16
4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16
5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
7 C -0.55 -32.65 9.11 25.60 0.23 -32.42 16
8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
9 C 0.03 1.73 4.97 29.85 0.15 1.88 16
10 C -0.09 -4.18 5.22 30.59 0.16 -4.02 16
11 C 0.06 2.09 3.61 86.30 0.31 2.40 16
12 N -0.53 -17.13 5.19 -860.56 -4.47 -21.60 16
13 C 0.04 1.25 5.55 86.77 0.48 1.73 16
14 C -0.12 -2.70 7.10 32.09 0.23 -2.47 16
15 C -0.13 -2.71 6.37 31.88 0.20 -2.51 16
16 C 0.06 1.52 3.84 45.26 0.17 1.69 16
17 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16
18 C 0.06 1.29 6.00 71.98 0.43 1.72 16
19 O -0.58 -15.14 9.85 -148.98 -1.47 -16.61 16
20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16
21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
22 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16
23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16
24 H 0.04 1.89 7.20 -2.39 -0.02 1.87 16
25 H 0.05 2.13 5.56 -2.39 -0.01 2.11 16
26 H 0.06 2.39 6.14 -2.38 -0.01 2.37 16
27 H 0.03 0.96 7.68 -2.39 -0.02 0.94 16
28 H 0.07 2.13 8.10 -2.39 -0.02 2.12 16
29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
32 H 0.07 1.63 6.92 -2.39 -0.02 1.61 16
33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
34 H 0.05 1.23 6.02 -2.39 -0.01 1.21 16
35 H 0.39 7.37 9.12 -74.06 -0.68 6.70 16
Total: -1.00 -68.75 274.33 -0.41 -69.15
By element:
Atomic # 1 Polarization: 10.54 SS G_CDS: 0.38 Total: 10.92 kcal
Atomic # 6 Polarization: -34.40 SS G_CDS: 2.83 Total: -31.57 kcal
Atomic # 7 Polarization: -75.27 SS G_CDS: -4.18 Total: -79.45 kcal
Atomic # 8 Polarization: -15.14 SS G_CDS: -1.47 Total: -16.61 kcal
Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal
Total: -68.75 -0.41 -69.15 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049579425.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.964 kcal
(2) G-P(sol) polarization free energy of solvation -68.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds