Wall clock time and date at job start Sun Mar 29 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99282 * 2 1 4 4 O 1.20821 * 120.00380 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99508 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.42037 * 302.31615 * 5 3 2 7 7 C 1.54906 * 110.37345 * 64.62347 * 5 3 2 8 8 C 1.55145 * 101.64904 * 155.89778 * 7 5 3 9 9 C 1.54313 * 103.02081 * 324.34777 * 8 7 5 10 10 N 1.47436 * 107.23514 * 22.28451 * 9 8 7 11 11 C 1.46895 * 111.00479 * 123.25643 * 10 9 8 12 12 C 1.50700 * 109.47051 * 69.87292 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99854 * 359.72512 * 14 12 11 17 17 H 1.48498 * 109.46909 * 90.00086 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00101 * 16 14 12 20 20 H 1.08999 * 109.47242 * 299.99879 * 1 2 3 21 21 H 1.08997 * 109.47717 * 60.00186 * 1 2 3 22 22 H 1.09003 * 109.46742 * 179.97438 * 1 2 3 23 23 H 1.09002 * 110.99370 * 37.81323 * 7 5 3 24 24 H 1.08998 * 111.02602 * 274.00228 * 7 5 3 25 25 H 1.08995 * 110.70338 * 205.96210 * 8 7 5 26 26 H 1.08997 * 110.85324 * 82.80236 * 8 7 5 27 27 H 1.09002 * 109.88824 * 262.87633 * 9 8 7 28 28 H 1.09003 * 109.88883 * 141.69162 * 9 8 7 29 29 H 1.09004 * 109.47210 * 309.87514 * 11 10 9 30 30 H 1.08997 * 109.47605 * 189.87874 * 11 10 9 31 31 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9750 0.7495 0.8625 7 6 4.1368 0.6821 -1.3130 8 6 5.5106 1.3968 -1.4083 9 6 5.2117 2.8014 -0.8435 10 7 4.0077 2.6861 -0.0005 11 6 4.2749 3.1539 1.3661 12 6 4.4640 4.6490 1.3572 13 1 4.3923 5.1969 0.4293 14 6 4.7285 5.3175 2.5338 15 7 4.8930 6.6223 2.5261 16 14 4.8449 4.3708 4.1400 17 1 6.2487 3.9392 4.3596 18 1 4.4142 5.2438 5.2614 19 1 3.9642 3.1768 4.0757 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 3.5046 0.9364 -2.1637 24 1 4.2632 -0.3975 -1.2318 25 1 5.8406 1.4605 -2.4452 26 1 6.2564 0.8868 -0.7986 27 1 5.0267 3.4981 -1.6611 28 1 6.0533 3.1463 -0.2428 29 1 5.1787 2.6756 1.7436 30 1 3.4328 2.8980 2.0090 31 1 5.0795 7.0924 3.3539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050050686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:46 Heat of formation + Delta-G solvation = -99.259643 kcal Electronic energy + Delta-G solvation = -14644.946415 eV Core-core repulsion = 12118.777512 eV Total energy + Delta-G solvation = -2526.168903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.60443 -39.55394 -37.30787 -35.13888 -32.97503 -31.03018 -28.83664 -28.27837 -24.59362 -23.41842 -21.94276 -20.94883 -19.02260 -18.61757 -17.58974 -17.41493 -16.86926 -16.26222 -15.71431 -14.67513 -14.62944 -14.43269 -14.34735 -14.03149 -13.70694 -13.13225 -13.02349 -12.72874 -12.53087 -12.14101 -12.00520 -11.80396 -11.76001 -11.62045 -11.53477 -11.25382 -10.82667 -9.14622 -8.31630 -6.35460 1.24389 1.29387 1.33534 1.43638 1.66392 2.31039 3.00515 3.20680 3.62209 3.67173 4.04394 4.10568 4.27904 4.33477 4.35323 4.56671 4.63588 4.70414 4.76453 4.92797 4.96446 5.07151 5.11074 5.34427 5.36090 5.50385 5.89079 6.21106 6.50673 6.69789 6.88730 7.27365 8.85574 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.010088 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.598033 B = 2774.896178 C = 3286.173744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.525 6.525 5 C 0.068 3.932 6 H 0.100 0.900 7 C -0.099 4.099 8 C -0.127 4.127 9 C 0.051 3.949 10 N -0.533 5.533 11 C 0.176 3.824 12 C -0.517 4.517 13 H 0.032 0.968 14 C 0.006 3.994 15 N -0.947 5.947 16 Si 0.949 3.051 17 H -0.256 1.256 18 H -0.280 1.280 19 H -0.256 1.256 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.141 0.859 23 H 0.075 0.925 24 H 0.120 0.880 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.004 0.996 30 H 0.012 0.988 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -18.656 -5.379 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.412 6.412 5 C -0.042 4.042 6 H 0.118 0.882 7 C -0.137 4.137 8 C -0.165 4.165 9 C -0.076 4.076 10 N -0.259 5.259 11 C 0.049 3.951 12 C -0.555 4.555 13 H 0.051 0.949 14 C -0.191 4.191 15 N -0.588 5.588 16 Si 0.772 3.228 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.180 1.180 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.159 0.841 23 H 0.094 0.906 24 H 0.139 0.861 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.623 -17.884 -5.470 18.885 hybrid contribution 0.168 0.363 1.202 1.267 sum -2.455 -17.521 -4.268 18.200 Atomic orbital electron populations 1.23526 0.75173 1.05757 1.02056 1.86474 1.24652 1.32193 1.84187 1.24053 0.92354 0.81223 0.71719 1.90674 1.67470 1.37926 1.45148 1.22292 0.87328 0.91495 1.03121 0.88220 1.22665 0.96043 1.01769 0.93210 1.22823 0.96984 0.93329 1.03358 1.22708 0.90198 0.98569 0.96173 1.62745 1.33604 1.16715 1.12807 1.20057 0.94012 0.94661 0.86412 1.21190 1.47568 0.92046 0.94686 0.94935 1.25894 0.94368 0.95782 1.03048 1.70056 1.50523 1.09262 1.28948 0.85693 0.79826 0.79018 0.78292 1.18012 1.20520 1.18026 0.93000 0.92273 0.84126 0.90633 0.86130 0.87980 0.89404 0.92340 0.93322 0.97888 0.97008 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -10.05 10.57 -51.48 -0.54 -10.60 16 3 C 0.46 16.85 7.30 71.24 0.52 17.37 16 4 O -0.52 -24.13 16.23 21.98 0.36 -23.77 16 5 C 0.07 2.28 2.91 44.64 0.13 2.41 16 6 H 0.10 3.04 7.81 -2.39 -0.02 3.02 16 7 C -0.10 -2.34 6.48 31.98 0.21 -2.13 16 8 C -0.13 -3.04 6.94 31.78 0.22 -2.82 16 9 C 0.05 1.88 6.39 86.65 0.55 2.44 16 10 N -0.53 -23.46 4.33 -869.53 -3.76 -27.22 16 11 C 0.18 8.89 3.37 85.56 0.29 9.18 16 12 C -0.52 -31.62 9.22 25.60 0.24 -31.39 16 13 H 0.03 2.23 8.03 -2.91 -0.02 2.21 16 14 C 0.01 0.38 5.47 84.66 0.46 0.84 16 15 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 16 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 20 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 21 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 22 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 24 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.97 7.31 -2.39 -0.02 1.95 16 29 H 0.00 0.17 7.40 -2.38 -0.02 0.15 16 30 H 0.01 0.63 7.12 -2.39 -0.02 0.61 16 31 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -77.53 262.95 3.10 -74.43 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.04 Total: 3.17 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 3.82 Total: -2.30 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -3.46 Total: -88.14 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.19 Total: -34.37 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -77.53 3.10 -74.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050050686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.829 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds