Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.87683 * 318.99051 * 6 4 3 8 8 C 1.54326 * 109.88124 * 80.00388 * 6 4 3 9 9 C 1.55153 * 102.94428 * 141.60979 * 8 6 4 10 10 C 1.54916 * 101.58114 * 324.49523 * 9 8 6 11 11 N 1.47015 * 109.88183 * 197.80816 * 6 4 3 12 12 C 1.36944 * 125.64771 * 61.62303 * 11 6 4 13 13 H 1.08001 * 120.00027 * 0.02562 * 12 11 6 14 14 C 1.38809 * 119.99893 * 179.97438 * 12 11 6 15 15 N 1.31620 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99731 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46987 * 90.00599 * 16 14 12 18 18 H 1.48504 * 109.47233 * 210.00576 * 16 14 12 19 19 H 1.48494 * 109.47095 * 330.00347 * 16 14 12 20 20 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 25 25 H 1.08998 * 110.71991 * 259.97560 * 8 6 4 26 26 H 1.09002 * 110.72114 * 23.06535 * 8 6 4 27 27 H 1.08999 * 111.00643 * 82.56754 * 9 8 6 28 28 H 1.09002 * 111.00446 * 206.42890 * 9 8 6 29 29 H 1.09003 * 110.36696 * 155.84509 * 10 9 8 30 30 H 1.08992 * 110.37033 * 278.06335 * 10 9 8 31 31 H 0.97003 * 119.99821 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.3480 3.5751 -0.6733 8 6 3.8879 3.5195 1.4289 9 6 5.2258 4.3001 1.5170 10 6 6.1678 3.3982 0.6809 11 7 5.3284 2.8960 -0.4221 12 6 5.7845 2.4624 -1.6384 13 1 5.0856 2.1117 -2.3834 14 6 7.1449 2.4745 -1.9140 15 7 7.9965 2.9023 -1.0062 16 14 7.7669 1.8836 -3.5734 17 1 7.8178 3.0276 -4.5189 18 1 9.1278 1.3103 -3.4164 19 1 6.8497 0.8433 -4.1040 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0396 4.1929 1.5515 26 1 3.8546 2.7209 2.1700 27 1 5.1316 5.2889 1.0680 28 1 5.5687 4.3724 2.5491 29 1 7.0012 3.9808 0.2885 30 1 6.5365 2.5703 1.2864 31 1 8.9472 2.9104 -1.1988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050064107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = -64.189099 kcal Electronic energy + Delta-G solvation = -14744.884772 eV Core-core repulsion = 12220.236641 eV Total energy + Delta-G solvation = -2524.648130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73557 -37.25652 -35.51867 -32.64513 -31.43046 -29.53382 -28.28749 -24.70838 -23.33389 -21.55304 -20.29670 -19.42934 -17.16107 -16.91701 -15.91398 -15.44956 -15.03903 -13.97007 -13.84221 -13.53694 -12.82149 -12.52925 -12.14057 -12.01270 -11.70336 -11.55105 -11.28246 -11.07531 -10.95162 -10.73906 -10.17065 -10.11722 -10.02608 -9.88643 -9.61168 -9.37691 -8.68379 -6.98398 -5.71264 -3.13153 3.13195 3.29406 3.44557 3.45039 3.48026 4.45602 5.12385 5.17422 5.30248 5.34927 5.42145 5.48141 5.58173 5.69231 5.81508 5.93720 6.02968 6.11153 6.19778 6.29809 6.53019 6.61705 6.75784 7.16381 7.50138 7.55828 7.79892 8.27524 8.69916 9.13706 9.72951 10.32898 11.32243 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.010599 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.653488 B = 2641.052009 C = 3383.394854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.429 3.571 5 O -0.491 6.491 6 C 0.169 3.831 7 H 0.072 0.928 8 C -0.114 4.114 9 C -0.145 4.145 10 C 0.147 3.853 11 N -0.564 5.564 12 C -0.222 4.222 13 H 0.076 0.924 14 C -0.004 4.004 15 N -0.917 5.917 16 Si 0.919 3.081 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.281 1.281 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.016 0.984 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 0.085 3.846 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.292 6.292 4 C 0.267 3.733 5 O -0.376 6.376 6 C 0.057 3.943 7 H 0.090 0.910 8 C -0.152 4.152 9 C -0.184 4.184 10 C 0.023 3.977 11 N -0.286 5.286 12 C -0.350 4.350 13 H 0.094 0.906 14 C -0.200 4.200 15 N -0.564 5.564 16 Si 0.749 3.251 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.207 1.207 20 H 0.082 0.918 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.035 0.965 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.436 -0.274 3.717 11.081 hybrid contribution 0.298 -0.899 -0.808 1.245 sum -10.138 -1.172 2.909 10.612 Atomic orbital electron populations 1.21765 0.93493 1.02197 1.03098 1.22815 0.94636 0.82513 1.01855 1.86633 1.26927 1.30696 1.84933 1.26593 0.79166 0.95542 0.71979 1.90604 1.60145 1.43020 1.43781 1.20924 0.88673 0.88082 0.96659 0.91045 1.22431 0.99116 0.99350 0.94346 1.23036 0.95673 0.99451 1.00204 1.22121 0.93659 0.94901 0.87066 1.44691 0.98435 1.72505 1.12971 1.19023 0.91371 1.35909 0.88688 0.90601 1.24796 0.95582 1.01021 0.98591 1.69800 1.01815 1.51831 1.32983 0.86005 0.78108 0.78344 0.82639 1.21344 1.21461 1.20650 0.91756 0.91018 0.91823 0.91995 0.92133 0.90852 0.91850 0.91566 0.91833 0.86837 0.96540 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 37.16 0.38 -1.27 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -7.02 10.22 -39.26 -0.40 -7.42 16 4 C 0.43 9.56 6.87 36.01 0.25 9.81 16 5 O -0.49 -12.83 15.89 -18.75 -0.30 -13.12 16 6 C 0.17 3.67 3.64 -68.10 -0.25 3.42 16 7 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 8 C -0.11 -2.04 6.47 -24.90 -0.16 -2.20 16 9 C -0.15 -2.70 7.09 -24.58 -0.17 -2.88 16 10 C 0.15 3.62 5.89 -2.52 -0.01 3.60 16 11 N -0.56 -14.84 2.81 -163.87 -0.46 -15.30 16 12 C -0.22 -6.39 9.55 -15.06 -0.14 -6.53 16 13 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 14 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 15 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 16 Si 0.92 22.72 29.55 -169.99 -5.02 17.70 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 24 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 3.07 5.87 -51.93 -0.30 2.76 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -32.42 262.60 -6.13 -38.55 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.48 Total: -2.78 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.02 Total: 4.85 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.10 Total: -41.73 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.70 Total: -20.55 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.42 -6.13 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050064107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.640 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds