Wall clock time and date at job start Sun Mar 29 2020 22:02:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.45199 * 109.47075 * 2 1
4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1
5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2
6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2
7 7 H 1.08995 * 109.87683 * 318.99051 * 6 4 3
8 8 C 1.54326 * 109.88124 * 80.00388 * 6 4 3
9 9 C 1.55153 * 102.94428 * 141.60979 * 8 6 4
10 10 C 1.54916 * 101.58114 * 324.49523 * 9 8 6
11 11 N 1.47015 * 109.88183 * 197.80816 * 6 4 3
12 12 C 1.36944 * 125.64771 * 61.62303 * 11 6 4
13 13 H 1.08001 * 120.00027 * 0.02562 * 12 11 6
14 14 C 1.38809 * 119.99893 * 179.97438 * 12 11 6
15 15 N 1.31620 * 120.00313 * 0.02562 * 14 12 11
16 16 Si 1.86805 * 119.99731 * 180.02562 * 14 12 11
17 17 H 1.48496 * 109.46987 * 90.00599 * 16 14 12
18 18 H 1.48504 * 109.47233 * 210.00576 * 16 14 12
19 19 H 1.48494 * 109.47095 * 330.00347 * 16 14 12
20 20 H 1.08998 * 109.47533 * 59.99688 * 1 2 3
21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3
22 22 H 1.09002 * 109.47153 * 300.00058 * 1 2 3
23 23 H 1.09002 * 109.47153 * 239.99942 * 2 1 3
24 24 H 1.09001 * 109.46832 * 120.00132 * 2 1 3
25 25 H 1.08998 * 110.71991 * 259.97560 * 8 6 4
26 26 H 1.09002 * 110.72114 * 23.06535 * 8 6 4
27 27 H 1.08999 * 111.00643 * 82.56754 * 9 8 6
28 28 H 1.09002 * 111.00446 * 206.42890 * 9 8 6
29 29 H 1.09003 * 110.36696 * 155.84509 * 10 9 8
30 30 H 1.08992 * 110.37033 * 278.06335 * 10 9 8
31 31 H 0.97003 * 119.99821 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5447 0.0005
5 8 4.0807 0.5865 0.0005
6 6 3.9207 2.9374 0.0000
7 1 3.3480 3.5751 -0.6733
8 6 3.8879 3.5195 1.4289
9 6 5.2258 4.3001 1.5170
10 6 6.1678 3.3982 0.6809
11 7 5.3284 2.8960 -0.4221
12 6 5.7845 2.4624 -1.6384
13 1 5.0856 2.1117 -2.3834
14 6 7.1449 2.4745 -1.9140
15 7 7.9965 2.9023 -1.0062
16 14 7.7669 1.8836 -3.5734
17 1 7.8178 3.0276 -4.5189
18 1 9.1278 1.3103 -3.4164
19 1 6.8497 0.8433 -4.1040
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3635 -1.0276 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 1.8933 -0.5139 0.8900
25 1 3.0396 4.1929 1.5515
26 1 3.8546 2.7209 2.1700
27 1 5.1316 5.2889 1.0680
28 1 5.5687 4.3724 2.5491
29 1 7.0012 3.9808 0.2885
30 1 6.5365 2.5703 1.2864
31 1 8.9472 2.9104 -1.1988
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000050064107.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:11
Heat of formation + Delta-G solvation = -84.771801 kcal
Electronic energy + Delta-G solvation = -14745.777304 eV
Core-core repulsion = 12220.236641 eV
Total energy + Delta-G solvation = -2525.540663 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.45102 -38.95846 -37.25489 -34.64940 -32.62920 -31.41812 -30.02111 -26.69707
-24.75129 -23.07005 -21.99245 -21.18138 -19.06692 -18.69755 -17.43418 -17.15236
-16.96690 -15.81762 -15.51233 -15.03145 -14.32114 -13.85488 -13.77384 -13.67736
-13.40171 -13.02993 -12.89962 -12.79755 -12.55728 -12.42037 -12.08705 -11.93107
-11.66942 -11.46623 -11.44015 -11.13854 -10.78713 -9.04473 -7.85207 -5.30656
1.36848 1.40841 1.43633 1.52357 1.82806 2.43862 3.28374 3.54674
3.84729 3.93927 4.00205 4.13310 4.17097 4.31144 4.36932 4.57388
4.82403 4.88919 4.93761 4.98361 5.14592 5.15767 5.24935 5.38672
5.55094 5.63569 5.75003 6.23905 6.97392 7.01774 7.65493 8.25758
9.16042
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.029918 B = 0.010599 C = 0.008274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 935.653488 B = 2641.052009 C = 3383.394854
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.047 3.953
3 O -0.364 6.364
4 C 0.436 3.564
5 O -0.539 6.539
6 C 0.156 3.844
7 H 0.089 0.911
8 C -0.102 4.102
9 C -0.127 4.127
10 C 0.145 3.855
11 N -0.589 5.589
12 C -0.236 4.236
13 H 0.069 0.931
14 C -0.060 4.060
15 N -0.942 5.942
16 Si 0.980 3.020
17 H -0.273 1.273
18 H -0.290 1.290
19 H -0.280 1.280
20 H 0.068 0.932
21 H 0.099 0.901
22 H 0.074 0.926
23 H 0.050 0.950
24 H 0.060 0.940
25 H 0.120 0.880
26 H 0.062 0.938
27 H 0.082 0.918
28 H 0.091 0.909
29 H 0.084 0.916
30 H -0.021 1.021
31 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.129 0.660 4.172 13.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.027 4.027
3 O -0.281 6.281
4 C 0.277 3.723
5 O -0.427 6.427
6 C 0.045 3.955
7 H 0.107 0.893
8 C -0.140 4.140
9 C -0.165 4.165
10 C 0.021 3.979
11 N -0.312 5.312
12 C -0.365 4.365
13 H 0.086 0.914
14 C -0.253 4.253
15 N -0.591 5.591
16 Si 0.808 3.192
17 H -0.199 1.199
18 H -0.216 1.216
19 H -0.206 1.206
20 H 0.087 0.913
21 H 0.117 0.883
22 H 0.093 0.907
23 H 0.069 0.931
24 H 0.078 0.922
25 H 0.138 0.862
26 H 0.081 0.919
27 H 0.100 0.900
28 H 0.110 0.890
29 H 0.102 0.898
30 H -0.003 1.003
31 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -12.717 0.319 4.054 13.352
hybrid contribution 0.852 -1.137 -0.887 1.675
sum -11.866 -0.818 3.167 12.308
Atomic orbital electron populations
1.21779 0.89496 1.04306 1.03903 1.23213 0.97670 0.80481 1.01385
1.86581 1.24626 1.32838 1.84053 1.26385 0.80031 0.95148 0.70777
1.90591 1.61500 1.44447 1.46207 1.21265 0.86696 0.87962 0.99581
0.89316 1.22488 1.00258 0.99774 0.91431 1.22905 0.94317 0.98690
1.00627 1.21950 0.94587 0.94277 0.87089 1.44867 1.00606 1.73020
1.12688 1.19229 0.91653 1.35641 0.89991 0.91357 1.25616 0.95854
1.01766 1.02026 1.70034 1.01618 1.52936 1.34466 0.85068 0.77091
0.78048 0.79018 1.19936 1.21621 1.20605 0.91279 0.88257 0.90654
0.93120 0.92194 0.86169 0.91878 0.89951 0.89015 0.89802 1.00318
0.93979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16
2 C 0.05 1.37 6.19 71.98 0.45 1.82 16
3 O -0.36 -13.03 10.22 -51.42 -0.53 -13.56 16
4 C 0.44 19.18 6.87 71.24 0.49 19.67 16
5 O -0.54 -28.65 15.89 21.97 0.35 -28.30 16
6 C 0.16 6.58 3.64 44.60 0.16 6.74 16
7 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16
8 C -0.10 -3.31 6.47 31.78 0.21 -3.10 16
9 C -0.13 -4.45 7.09 31.99 0.23 -4.22 16
10 C 0.15 7.31 5.89 86.86 0.51 7.82 16
11 N -0.59 -31.39 2.81 -672.37 -1.89 -33.28 16
12 C -0.24 -13.91 9.55 84.03 0.80 -13.11 16
13 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16
14 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16
15 N -0.94 -57.32 10.09 21.65 0.22 -57.10 16
16 Si 0.98 47.61 29.55 68.60 2.03 49.63 16
17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16
18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16
19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16
20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
21 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
23 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16
24 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16
25 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16
26 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16
27 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16
28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
29 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16
30 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16
31 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16
Total: -1.00 -72.97 262.60 5.33 -67.64
By element:
Atomic # 1 Polarization: 3.19 SS G_CDS: 1.10 Total: 4.29 kcal
Atomic # 6 Polarization: 6.63 SS G_CDS: 4.05 Total: 10.67 kcal
Atomic # 7 Polarization: -88.71 SS G_CDS: -1.67 Total: -90.38 kcal
Atomic # 8 Polarization: -41.68 SS G_CDS: -0.18 Total: -41.86 kcal
Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal
Total: -72.97 5.33 -67.64 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000050064107.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal
(2) G-P(sol) polarization free energy of solvation -72.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds