Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.87683 * 318.99051 * 6 4 3 8 8 C 1.54326 * 109.88124 * 80.00388 * 6 4 3 9 9 C 1.55153 * 102.94428 * 141.60979 * 8 6 4 10 10 C 1.54916 * 101.58114 * 324.49523 * 9 8 6 11 11 N 1.47015 * 109.88183 * 197.80816 * 6 4 3 12 12 C 1.36944 * 125.64771 * 61.62303 * 11 6 4 13 13 H 1.08001 * 120.00027 * 0.02562 * 12 11 6 14 14 C 1.38809 * 119.99893 * 179.97438 * 12 11 6 15 15 N 1.31620 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99731 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46987 * 90.00599 * 16 14 12 18 18 H 1.48504 * 109.47233 * 210.00576 * 16 14 12 19 19 H 1.48494 * 109.47095 * 330.00347 * 16 14 12 20 20 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 25 25 H 1.08998 * 110.71991 * 259.97560 * 8 6 4 26 26 H 1.09002 * 110.72114 * 23.06535 * 8 6 4 27 27 H 1.08999 * 111.00643 * 82.56754 * 9 8 6 28 28 H 1.09002 * 111.00446 * 206.42890 * 9 8 6 29 29 H 1.09003 * 110.36696 * 155.84509 * 10 9 8 30 30 H 1.08992 * 110.37033 * 278.06335 * 10 9 8 31 31 H 0.97003 * 119.99821 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.3480 3.5751 -0.6733 8 6 3.8879 3.5195 1.4289 9 6 5.2258 4.3001 1.5170 10 6 6.1678 3.3982 0.6809 11 7 5.3284 2.8960 -0.4221 12 6 5.7845 2.4624 -1.6384 13 1 5.0856 2.1117 -2.3834 14 6 7.1449 2.4745 -1.9140 15 7 7.9965 2.9023 -1.0062 16 14 7.7669 1.8836 -3.5734 17 1 7.8178 3.0276 -4.5189 18 1 9.1278 1.3103 -3.4164 19 1 6.8497 0.8433 -4.1040 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0396 4.1929 1.5515 26 1 3.8546 2.7209 2.1700 27 1 5.1316 5.2889 1.0680 28 1 5.5687 4.3724 2.5491 29 1 7.0012 3.9808 0.2885 30 1 6.5365 2.5703 1.2864 31 1 8.9472 2.9104 -1.1988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050064107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = -84.771801 kcal Electronic energy + Delta-G solvation = -14745.777304 eV Core-core repulsion = 12220.236641 eV Total energy + Delta-G solvation = -2525.540663 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.45102 -38.95846 -37.25489 -34.64940 -32.62920 -31.41812 -30.02111 -26.69707 -24.75129 -23.07005 -21.99245 -21.18138 -19.06692 -18.69755 -17.43418 -17.15236 -16.96690 -15.81762 -15.51233 -15.03145 -14.32114 -13.85488 -13.77384 -13.67736 -13.40171 -13.02993 -12.89962 -12.79755 -12.55728 -12.42037 -12.08705 -11.93107 -11.66942 -11.46623 -11.44015 -11.13854 -10.78713 -9.04473 -7.85207 -5.30656 1.36848 1.40841 1.43633 1.52357 1.82806 2.43862 3.28374 3.54674 3.84729 3.93927 4.00205 4.13310 4.17097 4.31144 4.36932 4.57388 4.82403 4.88919 4.93761 4.98361 5.14592 5.15767 5.24935 5.38672 5.55094 5.63569 5.75003 6.23905 6.97392 7.01774 7.65493 8.25758 9.16042 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.010599 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.653488 B = 2641.052009 C = 3383.394854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 O -0.364 6.364 4 C 0.436 3.564 5 O -0.539 6.539 6 C 0.156 3.844 7 H 0.089 0.911 8 C -0.102 4.102 9 C -0.127 4.127 10 C 0.145 3.855 11 N -0.589 5.589 12 C -0.236 4.236 13 H 0.069 0.931 14 C -0.060 4.060 15 N -0.942 5.942 16 Si 0.980 3.020 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.280 1.280 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.084 0.916 30 H -0.021 1.021 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 0.660 4.172 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 O -0.281 6.281 4 C 0.277 3.723 5 O -0.427 6.427 6 C 0.045 3.955 7 H 0.107 0.893 8 C -0.140 4.140 9 C -0.165 4.165 10 C 0.021 3.979 11 N -0.312 5.312 12 C -0.365 4.365 13 H 0.086 0.914 14 C -0.253 4.253 15 N -0.591 5.591 16 Si 0.808 3.192 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.206 1.206 20 H 0.087 0.913 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.102 0.898 30 H -0.003 1.003 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.717 0.319 4.054 13.352 hybrid contribution 0.852 -1.137 -0.887 1.675 sum -11.866 -0.818 3.167 12.308 Atomic orbital electron populations 1.21779 0.89496 1.04306 1.03903 1.23213 0.97670 0.80481 1.01385 1.86581 1.24626 1.32838 1.84053 1.26385 0.80031 0.95148 0.70777 1.90591 1.61500 1.44447 1.46207 1.21265 0.86696 0.87962 0.99581 0.89316 1.22488 1.00258 0.99774 0.91431 1.22905 0.94317 0.98690 1.00627 1.21950 0.94587 0.94277 0.87089 1.44867 1.00606 1.73020 1.12688 1.19229 0.91653 1.35641 0.89991 0.91357 1.25616 0.95854 1.01766 1.02026 1.70034 1.01618 1.52936 1.34466 0.85068 0.77091 0.78048 0.79018 1.19936 1.21621 1.20605 0.91279 0.88257 0.90654 0.93120 0.92194 0.86169 0.91878 0.89951 0.89015 0.89802 1.00318 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.36 -13.03 10.22 -51.42 -0.53 -13.56 16 4 C 0.44 19.18 6.87 71.24 0.49 19.67 16 5 O -0.54 -28.65 15.89 21.97 0.35 -28.30 16 6 C 0.16 6.58 3.64 44.60 0.16 6.74 16 7 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 8 C -0.10 -3.31 6.47 31.78 0.21 -3.10 16 9 C -0.13 -4.45 7.09 31.99 0.23 -4.22 16 10 C 0.15 7.31 5.89 86.86 0.51 7.82 16 11 N -0.59 -31.39 2.81 -672.37 -1.89 -33.28 16 12 C -0.24 -13.91 9.55 84.03 0.80 -13.11 16 13 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 14 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 15 N -0.94 -57.32 10.09 21.65 0.22 -57.10 16 16 Si 0.98 47.61 29.55 68.60 2.03 49.63 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 24 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 25 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16 30 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 31 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -72.97 262.60 5.33 -67.64 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.10 Total: 4.29 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 4.05 Total: 10.67 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.67 Total: -90.38 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.18 Total: -41.86 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -72.97 5.33 -67.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050064107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds