Wall clock time and date at job start Sun Mar 29 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08994 * 109.82861 * 55.56051 * 15 13 12 17 17 C 1.54387 * 109.83227 * 294.58170 * 15 13 12 18 18 C 1.55303 * 102.25646 * 219.13528 * 17 15 13 19 19 C 1.54954 * 100.94099 * 34.12923 * 18 17 15 20 20 O 1.43241 * 109.83025 * 176.45138 * 15 13 12 21 21 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 22 22 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 23 23 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 26 26 H 1.09003 * 110.84340 * 337.32606 * 17 15 13 27 27 H 1.08999 * 110.84730 * 100.94032 * 17 15 13 28 28 H 1.09003 * 111.12406 * 276.21478 * 18 17 15 29 29 H 1.08997 * 111.16287 * 152.06629 * 18 17 15 30 30 H 1.08999 * 110.30611 * 204.63913 * 19 18 17 31 31 H 1.09004 * 110.30488 * 82.47376 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6042 -1.1935 3.3864 17 6 1.6198 -1.8104 4.0181 18 6 1.6464 -1.6934 5.5664 19 6 1.8794 -0.1716 5.7424 20 8 2.7631 0.1987 4.6722 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.7086 1.1614 -3.4843 25 1 2.2489 -1.6319 1.1525 26 1 0.6274 -1.5830 3.6288 27 1 1.9457 -2.8001 3.6981 28 1 2.4700 -2.2685 5.9898 29 1 0.6940 -1.9978 6.0005 30 1 2.3468 0.0305 6.7062 31 1 0.9360 0.3678 5.6580 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:21 Heat of formation + Delta-G solvation = -92.349730 kcal Electronic energy + Delta-G solvation = -14476.492619 eV Core-core repulsion = 11950.623352 eV Total energy + Delta-G solvation = -2525.869267 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85434 -37.78117 -34.70619 -32.58386 -31.91165 -30.05521 -28.21218 -25.24673 -23.51994 -21.73292 -20.87400 -19.33856 -17.47716 -16.76990 -15.94784 -15.32654 -15.14180 -14.45425 -14.05043 -13.63552 -13.21905 -12.85731 -12.34698 -11.99482 -11.75523 -11.44180 -11.29978 -11.07948 -11.01116 -10.91974 -10.69538 -10.31429 -10.22531 -9.90604 -9.04606 -8.67200 -8.51863 -7.88321 -6.11065 -4.20670 3.26064 3.30945 3.31926 3.35526 3.74184 4.21017 4.37688 4.49847 4.79477 5.03861 5.17143 5.20785 5.31106 5.60369 5.63951 5.67751 5.78829 5.84565 6.07489 6.82713 6.96815 7.02008 7.16278 7.48240 7.58692 7.71036 7.93335 8.16223 8.68584 8.80154 9.16347 9.47009 10.94941 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061705 B = 0.006916 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.661057 B = 4047.866424 C = 4179.461772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.488 3.512 14 O -0.539 6.539 15 C 0.062 3.938 16 H 0.100 0.900 17 C -0.145 4.145 18 C -0.155 4.155 19 C 0.048 3.952 20 O -0.354 6.354 21 H 0.013 0.987 22 H 0.090 0.910 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.388 0.612 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -7.570 12.129 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.272 3.728 14 O -0.417 6.417 15 C 0.001 3.999 16 H 0.118 0.882 17 C -0.183 4.183 18 C -0.192 4.192 19 C -0.029 4.029 20 O -0.272 6.272 21 H 0.033 0.967 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.220 0.780 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.828 -6.386 12.000 13.619 hybrid contribution 0.241 -1.106 -0.925 1.462 sum 1.069 -7.493 11.075 13.414 Atomic orbital electron populations 1.22077 0.98522 0.99037 1.00880 1.18732 0.90981 0.94038 0.79967 0.93413 1.21185 1.32514 1.13245 0.90338 0.92104 1.24897 0.94813 0.94962 0.99067 1.69894 1.35799 1.22434 1.23998 0.86494 0.79177 0.79536 0.81787 1.20172 1.21121 1.20169 1.46494 1.65481 1.13506 1.10280 1.20744 0.79266 0.87949 0.84884 1.90661 1.50143 1.15896 1.84971 1.22727 0.99914 0.89412 0.87883 0.88207 1.23100 1.00315 0.99107 0.95737 1.23271 1.03041 0.97098 0.95819 1.23424 0.94642 0.93814 0.90983 1.88503 1.61819 1.51278 1.25624 0.96743 0.89135 0.95490 0.92504 0.78033 0.89814 0.89185 0.90242 0.89794 0.89641 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.88 2.56 -69.09 -0.18 6.70 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -15.03 5.05 -54.94 -0.28 -15.31 16 13 C 0.49 10.33 6.99 -10.99 -0.08 10.25 16 14 O -0.54 -14.06 16.19 -14.09 -0.23 -14.29 16 15 C 0.06 0.98 3.95 -27.16 -0.11 0.88 16 16 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 17 C -0.14 -1.74 6.52 -24.78 -0.16 -1.90 16 18 C -0.15 -1.53 7.16 -24.48 -0.18 -1.70 16 19 C 0.05 0.60 7.78 38.19 0.30 0.90 16 20 O -0.35 -6.09 10.56 -54.88 -0.58 -6.67 16 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 25 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 26 H 0.08 1.11 7.84 -51.93 -0.41 0.71 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -32.49 263.43 -6.35 -38.84 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.39 Total: 3.47 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.45 Total: -1.14 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.35 Total: -39.88 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.81 Total: -20.95 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.49 -6.35 -38.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.509 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds