Wall clock time and date at job start Sun Mar 29 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08994 * 109.82861 * 55.56051 * 15 13 12 17 17 C 1.54387 * 109.83227 * 294.58170 * 15 13 12 18 18 C 1.55303 * 102.25646 * 219.13528 * 17 15 13 19 19 C 1.54954 * 100.94099 * 34.12923 * 18 17 15 20 20 O 1.43241 * 109.83025 * 176.45138 * 15 13 12 21 21 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 22 22 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 23 23 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 26 26 H 1.09003 * 110.84340 * 337.32606 * 17 15 13 27 27 H 1.08999 * 110.84730 * 100.94032 * 17 15 13 28 28 H 1.09003 * 111.12406 * 276.21478 * 18 17 15 29 29 H 1.08997 * 111.16287 * 152.06629 * 18 17 15 30 30 H 1.08999 * 110.30611 * 204.63913 * 19 18 17 31 31 H 1.09004 * 110.30488 * 82.47376 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6042 -1.1935 3.3864 17 6 1.6198 -1.8104 4.0181 18 6 1.6464 -1.6934 5.5664 19 6 1.8794 -0.1716 5.7424 20 8 2.7631 0.1987 4.6722 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.7086 1.1614 -3.4843 25 1 2.2489 -1.6319 1.1525 26 1 0.6274 -1.5830 3.6288 27 1 1.9457 -2.8001 3.6981 28 1 2.4700 -2.2685 5.9898 29 1 0.6940 -1.9978 6.0005 30 1 2.3468 0.0305 6.7062 31 1 0.9360 0.3678 5.6580 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:21 Heat of formation + Delta-G solvation = -115.815124 kcal Electronic energy + Delta-G solvation = -14477.510155 eV Core-core repulsion = 11950.623352 eV Total energy + Delta-G solvation = -2526.886803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.24329 -39.30681 -36.68001 -34.43001 -33.09977 -31.59804 -29.79060 -27.35612 -24.86896 -22.70657 -22.60403 -21.11697 -19.11498 -18.12712 -17.51193 -16.95562 -16.64291 -16.17336 -15.65935 -15.11821 -14.53180 -14.37169 -14.01605 -13.78645 -13.03965 -12.98208 -12.82617 -12.75046 -12.64860 -12.27901 -12.18189 -12.12349 -11.87255 -11.17652 -11.13942 -10.61932 -10.22735 -9.78625 -8.18010 -6.36570 1.45265 1.48032 1.55845 1.73461 2.26298 2.47578 3.02877 3.12184 3.50791 3.85965 3.88980 4.16570 4.23912 4.46298 4.72099 4.79124 4.81671 4.87927 4.90822 4.98116 5.06886 5.22054 5.40668 5.59004 5.65324 5.84990 5.98549 6.07806 6.71114 6.94811 7.31187 7.53828 8.88411 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061705 B = 0.006916 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.661057 B = 4047.866424 C = 4179.461772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.008 1.008 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.977 3.023 9 H -0.261 1.261 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.698 5.698 13 C 0.480 3.520 14 O -0.599 6.599 15 C 0.068 3.932 16 H 0.129 0.871 17 C -0.141 4.141 18 C -0.138 4.138 19 C 0.034 3.966 20 O -0.389 6.389 21 H 0.007 0.993 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.266 0.734 25 H 0.407 0.593 26 H 0.065 0.935 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -10.528 12.852 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.010 0.990 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.349 5.349 13 C 0.267 3.733 14 O -0.481 6.481 15 C 0.007 3.993 16 H 0.147 0.853 17 C -0.179 4.179 18 C -0.176 4.176 19 C -0.042 4.042 20 O -0.307 6.307 21 H 0.027 0.973 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.243 0.757 26 H 0.084 0.916 27 H 0.143 0.857 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.601 -9.398 12.754 15.923 hybrid contribution -0.007 -0.111 -1.091 1.097 sum 1.595 -9.509 11.663 15.133 Atomic orbital electron populations 1.21887 0.98209 0.99625 0.99373 1.18350 0.91227 0.91780 0.82112 0.99019 1.21529 1.32758 1.13704 0.90642 0.90486 1.25866 0.94814 0.95576 1.02523 1.70059 1.36993 1.24029 1.24744 0.85333 0.78607 0.78742 0.77256 1.18542 1.21262 1.19574 1.46212 1.65153 1.14288 1.09242 1.21912 0.77755 0.87436 0.86233 1.90626 1.52661 1.18770 1.86003 1.22832 1.02087 0.89390 0.85034 0.85350 1.23169 0.98161 0.99159 0.97388 1.23276 1.05300 0.94895 0.94085 1.23728 0.93692 0.96034 0.90768 1.88478 1.62766 1.52735 1.26755 0.97343 0.91502 0.93620 0.92514 0.75702 0.91602 0.85673 0.87656 0.87588 0.87151 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.19 16 2 C 0.27 14.35 2.56 44.24 0.11 14.47 16 3 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 4 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.38 16 8 Si 0.98 41.96 29.54 68.60 2.03 43.99 16 9 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 N -0.70 -29.58 5.05 -446.11 -2.25 -31.83 16 13 C 0.48 20.54 6.99 87.66 0.61 21.16 16 14 O -0.60 -32.71 16.19 15.75 0.25 -32.46 16 15 C 0.07 2.03 3.95 30.32 0.12 2.15 16 16 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 17 C -0.14 -2.94 6.52 31.86 0.21 -2.73 16 18 C -0.14 -2.18 7.16 32.05 0.23 -1.95 16 19 C 0.03 0.78 7.78 72.65 0.57 1.35 16 20 O -0.39 -13.03 10.56 -130.19 -1.38 -14.41 16 21 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.07 3.79 6.07 -2.38 -0.01 3.77 16 23 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.41 13.88 8.54 -92.71 -0.79 13.09 16 26 H 0.07 1.62 7.84 -2.39 -0.02 1.60 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -73.83 263.43 2.41 -71.42 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.33 Total: 16.36 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 3.19 Total: 0.31 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.01 Total: -85.22 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.12 Total: -46.86 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -73.83 2.41 -71.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.397 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds