Wall clock time and date at job start Sun Mar 29 2020 21:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.08996 * 110.27284 * 305.64088 * 15 13 12 17 17 C 1.54944 * 110.30838 * 67.83549 * 15 13 12 18 18 C 1.55309 * 100.94071 * 155.36236 * 17 15 13 19 19 C 1.54387 * 102.25091 * 325.86353 * 18 17 15 20 20 O 1.43235 * 107.58913 * 21.36047 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 25 25 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 26 26 H 1.09000 * 111.12908 * 273.27673 * 17 15 13 27 27 H 1.09005 * 111.12317 * 37.44168 * 17 15 13 28 28 H 1.09000 * 110.84670 * 207.67965 * 18 17 15 29 29 H 1.08994 * 110.85070 * 84.05699 * 18 17 15 30 30 H 1.08998 * 109.83122 * 261.84368 * 19 18 17 31 31 H 1.08996 * 109.90005 * 140.91552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 1 3.6052 -1.2108 -3.3812 17 6 1.6107 -1.7724 -4.0683 18 6 1.9764 -1.8807 -5.5738 19 6 2.4188 -0.4397 -5.9078 20 8 2.7836 0.1972 -4.6779 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 0.7095 1.1617 3.4844 25 1 2.2490 -1.6317 -1.1527 26 1 1.7492 -2.7271 -3.5608 27 1 0.5934 -1.4036 -3.9366 28 1 1.1061 -2.1660 -6.1648 29 1 2.7962 -2.5829 -5.7244 30 1 1.5954 0.1011 -6.3743 31 1 3.2755 -0.4614 -6.5814 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:24 Heat of formation + Delta-G solvation = -91.783184 kcal Electronic energy + Delta-G solvation = -14427.612900 eV Core-core repulsion = 11901.768201 eV Total energy + Delta-G solvation = -2525.844700 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80627 -37.86866 -34.72192 -32.57552 -31.93931 -30.06808 -28.24398 -25.25015 -23.55571 -21.68888 -20.89724 -19.37734 -17.53917 -16.75020 -15.90223 -15.24884 -15.01743 -14.62069 -14.16232 -13.73195 -13.21928 -12.86750 -12.36965 -12.00064 -11.74911 -11.49458 -11.41254 -11.07548 -10.99676 -10.92178 -10.70514 -10.29659 -10.22988 -9.68363 -9.04795 -8.77888 -8.53425 -7.89893 -6.11634 -4.21139 3.25060 3.29378 3.32185 3.34512 3.62926 4.25147 4.36850 4.51162 4.78064 5.02274 5.15561 5.19955 5.24442 5.57033 5.61181 5.65836 5.77090 5.82718 6.06156 6.82666 6.97118 7.01819 7.16092 7.47035 7.58241 7.70587 7.92875 8.15698 8.67052 8.79548 9.14656 9.46501 10.94451 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061007 B = 0.006819 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.855760 B = 4104.892278 C = 4249.285809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.500 3.500 14 O -0.536 6.536 15 C 0.062 3.938 16 H 0.091 0.909 17 C -0.144 4.144 18 C -0.154 4.154 19 C 0.048 3.952 20 O -0.355 6.355 21 H 0.026 0.974 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.264 0.736 25 H 0.388 0.612 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -7.933 -12.074 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.283 3.717 14 O -0.414 6.414 15 C 0.001 3.999 16 H 0.108 0.892 17 C -0.182 4.182 18 C -0.192 4.192 19 C -0.029 4.029 20 O -0.273 6.273 21 H 0.045 0.955 22 H 0.109 0.891 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.220 0.780 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.454 -6.721 -11.928 13.768 hybrid contribution 0.352 -1.156 0.819 1.460 sum 1.806 -7.877 -11.109 13.737 Atomic orbital electron populations 1.22076 0.98454 0.99089 1.00930 1.18755 0.91042 0.94050 0.79844 0.93346 1.21215 1.32455 1.13249 0.90298 0.92039 1.24898 0.94803 0.94982 0.99078 1.69910 1.35832 1.22452 1.23891 0.86431 0.78610 0.79790 0.82151 1.20544 1.21073 1.19861 1.46454 1.65509 1.13477 1.10187 1.20238 0.79324 0.87704 0.84388 1.90674 1.50073 1.15835 1.84769 1.22938 0.98990 0.89760 0.88250 0.89179 1.23224 1.00125 0.99417 0.95426 1.23125 1.02203 0.97433 0.96390 1.23164 0.99784 0.92410 0.87532 1.88540 1.88287 1.36280 1.14234 0.95450 0.89120 0.96667 0.92556 0.77995 0.89082 0.89719 0.89864 0.90349 0.91332 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 N -0.71 -14.96 5.07 -54.93 -0.28 -15.24 16 13 C 0.50 10.61 7.14 -10.99 -0.08 10.54 16 14 O -0.54 -14.04 16.21 -13.77 -0.22 -14.27 16 15 C 0.06 0.98 3.86 -26.86 -0.10 0.88 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.14 -1.75 6.56 -24.48 -0.16 -1.91 16 18 C -0.15 -1.48 7.02 -24.78 -0.17 -1.65 16 19 C 0.05 0.57 7.79 37.88 0.30 0.87 16 20 O -0.36 -6.15 10.61 -54.56 -0.58 -6.73 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 263.71 15.07 3.97 3.97 Total: -1.00 -32.43 263.71 -6.35 -38.78 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.40 Total: 3.14 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.45 Total: -0.80 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.35 Total: -39.73 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.80 Total: -20.99 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.43 -6.35 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.008 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds