Wall clock time and date at job start Sun Mar 29 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 89.99870 * 8 6 4 10 10 H 1.48503 * 109.47250 * 209.99665 * 8 6 4 11 11 H 1.48499 * 109.47267 * 329.99827 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.08996 * 110.27284 * 305.64088 * 15 13 12 17 17 C 1.54944 * 110.30838 * 67.83549 * 15 13 12 18 18 C 1.55309 * 100.94071 * 155.36236 * 17 15 13 19 19 C 1.54387 * 102.25091 * 325.86353 * 18 17 15 20 20 O 1.43235 * 107.58913 * 21.36047 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 25 25 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 26 26 H 1.09000 * 111.12908 * 273.27673 * 17 15 13 27 27 H 1.09005 * 111.12317 * 37.44168 * 17 15 13 28 28 H 1.09000 * 110.84670 * 207.67965 * 18 17 15 29 29 H 1.08994 * 110.85070 * 84.05699 * 18 17 15 30 30 H 1.08998 * 109.83122 * 261.84368 * 19 18 17 31 31 H 1.08996 * 109.90005 * 140.91552 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 1 3.6052 -1.2108 -3.3812 17 6 1.6107 -1.7724 -4.0683 18 6 1.9764 -1.8807 -5.5738 19 6 2.4188 -0.4397 -5.9078 20 8 2.7836 0.1972 -4.6779 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 0.7095 1.1617 3.4844 25 1 2.2490 -1.6317 -1.1527 26 1 1.7492 -2.7271 -3.5608 27 1 0.5934 -1.4036 -3.9366 28 1 1.1061 -2.1660 -6.1648 29 1 2.7962 -2.5829 -5.7244 30 1 1.5954 0.1011 -6.3743 31 1 3.2755 -0.4614 -6.5814 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:23 Heat of formation + Delta-G solvation = -115.214786 kcal Electronic energy + Delta-G solvation = -14428.628971 eV Core-core repulsion = 11901.768201 eV Total energy + Delta-G solvation = -2526.860770 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18802 -39.38147 -36.69269 -34.42354 -33.10855 -31.60005 -29.80841 -27.35251 -24.88764 -22.75290 -22.49879 -21.15807 -19.16051 -18.10587 -17.52335 -16.96374 -16.39797 -16.16893 -15.71600 -15.27487 -14.55944 -14.31938 -14.17639 -13.76396 -13.04829 -12.96424 -12.81989 -12.77173 -12.68089 -12.27324 -12.24948 -12.11119 -11.80831 -11.13083 -10.93746 -10.61769 -10.33128 -9.79762 -8.17864 -6.36180 1.45861 1.46888 1.57624 1.70985 2.17811 2.44973 3.10399 3.12888 3.49742 3.83155 3.93868 4.17183 4.20091 4.39580 4.73043 4.79086 4.82770 4.88468 4.90890 4.99907 5.07354 5.22434 5.40795 5.58881 5.65441 5.85377 6.01611 6.07983 6.71494 6.93454 7.31295 7.52438 8.88852 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061007 B = 0.006819 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.855760 B = 4104.892278 C = 4249.285809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.007 1.007 4 C -0.547 4.547 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.977 3.023 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.256 1.256 12 N -0.697 5.697 13 C 0.492 3.508 14 O -0.597 6.597 15 C 0.067 3.933 16 H 0.121 0.879 17 C -0.141 4.141 18 C -0.138 4.138 19 C 0.035 3.965 20 O -0.397 6.397 21 H 0.045 0.955 22 H 0.066 0.934 23 H 0.008 0.992 24 H 0.266 0.734 25 H 0.408 0.592 26 H 0.121 0.879 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -10.938 -12.769 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.011 0.989 4 C -0.585 4.585 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.180 1.180 12 N -0.347 5.347 13 C 0.279 3.721 14 O -0.478 6.478 15 C 0.006 3.994 16 H 0.138 0.862 17 C -0.179 4.179 18 C -0.176 4.176 19 C -0.041 4.041 20 O -0.316 6.316 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.027 0.973 24 H 0.075 0.925 25 H 0.244 0.756 26 H 0.140 0.860 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.304 -9.782 -12.655 16.161 hybrid contribution 0.088 -0.152 0.971 0.986 sum 2.392 -9.934 -11.685 15.522 Atomic orbital electron populations 1.21890 0.98160 0.99699 0.99416 1.18376 0.91277 0.91830 0.81975 0.98894 1.21550 1.32661 1.13681 0.90570 0.90424 1.25864 0.94817 0.95603 1.02520 1.70071 1.37032 1.24046 1.24674 0.85278 0.77659 0.79261 0.77722 1.20459 1.20997 1.18022 1.46158 1.65146 1.14259 1.09147 1.21348 0.77849 0.87170 0.85759 1.90638 1.52616 1.18732 1.85838 1.22994 1.01215 0.89589 0.85557 0.86188 1.23283 0.97780 0.99183 0.97624 1.23131 1.04000 0.96131 0.94296 1.23483 1.00869 0.93891 0.85856 1.88503 1.88607 1.38414 1.16093 0.93548 0.91484 0.97290 0.92527 0.75632 0.86029 0.91638 0.87724 0.87623 0.91560 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.29 2.56 44.24 0.11 14.41 16 3 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16 4 C -0.55 -29.01 8.73 25.60 0.22 -28.79 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.98 41.84 29.54 68.60 2.03 43.87 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 N -0.70 -29.39 5.07 -446.09 -2.26 -31.65 16 13 C 0.49 21.13 7.14 87.66 0.63 21.75 16 14 O -0.60 -32.74 16.21 15.43 0.25 -32.49 16 15 C 0.07 2.03 3.86 30.51 0.12 2.14 16 16 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 17 C -0.14 -2.99 6.56 32.05 0.21 -2.78 16 18 C -0.14 -2.09 7.02 31.86 0.22 -1.87 16 19 C 0.03 0.76 7.79 72.45 0.56 1.32 16 20 O -0.40 -13.44 10.61 -130.50 -1.38 -14.82 16 21 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 22 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 23 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.41 13.78 8.54 -92.71 -0.79 12.99 16 26 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.65 8.05 -2.38 -0.02 1.63 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.73 263.71 2.40 -71.33 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.33 Total: 15.91 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 3.19 Total: 1.07 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.02 Total: -84.87 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.13 Total: -47.32 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -73.73 2.40 -71.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.880 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds