Wall clock time and date at job start Sun Mar 29 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99890 * 2 1 4 4 H 1.08993 * 110.43441 * 27.45924 * 3 2 1 5 5 C 1.54891 * 110.59521 * 264.83973 * 3 2 1 6 6 C 1.54889 * 102.74604 * 203.32366 * 5 3 2 7 7 C 1.54269 * 104.19839 * 37.94074 * 6 5 3 8 8 C 1.53872 * 106.59616 * 336.39520 * 7 6 5 9 9 H 1.09000 * 110.07721 * 119.30212 * 8 7 6 10 10 N 1.46507 * 110.03076 * 240.71037 * 8 7 6 11 11 C 1.34775 * 119.99876 * 272.16931 * 10 8 7 12 12 O 1.21683 * 120.00208 * 359.97438 * 11 10 8 13 13 C 1.46373 * 119.99634 * 179.97438 * 11 10 8 14 14 H 1.08002 * 120.00452 * 0.02562 * 13 11 10 15 15 C 1.40050 * 119.99716 * 179.71971 * 13 11 10 16 16 N 1.30674 * 120.00151 * 0.28083 * 15 13 11 17 17 Si 1.86803 * 119.99913 * 180.27503 * 15 13 11 18 18 H 1.48496 * 109.47191 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47055 * 120.00243 * 17 15 13 20 20 H 1.48498 * 109.47283 * 240.00320 * 17 15 13 21 21 H 1.08997 * 109.47008 * 60.00565 * 1 2 3 22 22 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47065 * 299.99832 * 1 2 3 24 24 H 1.08995 * 110.75934 * 321.63606 * 5 3 2 25 25 H 1.08993 * 110.75906 * 84.83053 * 5 3 2 26 26 H 1.09004 * 110.48811 * 156.62158 * 6 5 3 27 27 H 1.08999 * 110.48816 * 279.13356 * 6 5 3 28 28 H 1.08986 * 110.03704 * 217.10288 * 7 6 5 29 29 H 1.09010 * 110.02816 * 95.67208 * 7 6 5 30 30 H 0.97000 * 119.99601 * 92.16270 * 10 8 7 31 31 H 0.97005 * 120.00029 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3370 2.0217 0.4710 5 6 2.3509 1.7502 -1.4440 6 6 3.4584 2.8102 -1.2228 7 6 4.2939 2.2465 -0.0549 8 6 3.3731 1.2897 0.7225 9 1 3.7883 0.2819 0.7145 10 7 3.2150 1.7559 2.1024 11 6 4.0953 1.3727 3.0482 12 8 5.0212 0.6391 2.7562 13 6 3.9376 1.8390 4.4267 14 1 3.1156 2.4898 4.6860 15 6 4.8491 1.4361 5.4107 16 7 5.8434 0.6484 5.0972 17 14 4.6434 2.0250 7.1715 18 1 3.4475 2.9004 7.2642 19 1 4.4697 0.8539 8.0681 20 1 5.8492 2.7883 7.5823 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.7303 0.9112 -2.0273 25 1 1.4801 2.1925 -1.9277 26 1 4.0731 2.9121 -2.1172 27 1 3.0190 3.7701 -0.9516 28 1 4.6231 3.0576 0.5943 29 1 5.1564 1.7031 -0.4410 30 1 2.4767 2.3405 2.3351 31 1 6.4749 0.3696 5.7787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050374236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:37 Heat of formation + Delta-G solvation = -96.639766 kcal Electronic energy + Delta-G solvation = -14487.772835 eV Core-core repulsion = 11961.717538 eV Total energy + Delta-G solvation = -2526.055297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01089 -36.91458 -35.46386 -32.62965 -31.80642 -28.00750 -27.58937 -26.08841 -25.13169 -20.71668 -20.45302 -19.07141 -17.32786 -16.50462 -15.62880 -15.23506 -14.88711 -14.37245 -13.88387 -13.52594 -13.38578 -12.48523 -12.36321 -12.06300 -11.83713 -11.22764 -11.16458 -11.02417 -10.82209 -10.76602 -10.43252 -10.37845 -10.14277 -10.05922 -9.34653 -8.82438 -7.55284 -7.43861 -6.14439 -4.59949 3.14990 3.22891 3.27333 3.95495 4.15004 4.61373 4.77110 4.86372 5.14491 5.26516 5.36958 5.47133 5.52196 5.73000 5.78989 5.81581 5.94519 5.94997 6.03668 6.19320 6.31013 6.45213 6.72083 6.77294 7.46859 7.50206 7.97296 8.16777 8.37735 9.06475 9.59003 10.64904 10.84289 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041894 B = 0.007791 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.195787 B = 3593.234159 C = 3893.274357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.077 3.923 4 H 0.067 0.933 5 C -0.142 4.142 6 C -0.121 4.121 7 C -0.130 4.130 8 C 0.154 3.846 9 H 0.089 0.911 10 N -0.760 5.760 11 C 0.556 3.444 12 O -0.578 6.578 13 C -0.546 4.546 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.035 0.965 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.377 0.623 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 3.758 -8.987 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.180 4.180 6 C -0.159 4.159 7 C -0.170 4.170 8 C 0.047 3.953 9 H 0.107 0.893 10 N -0.414 5.414 11 C 0.360 3.640 12 O -0.461 6.461 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.208 0.792 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.797 2.924 -9.124 12.353 hybrid contribution -0.723 0.808 0.971 1.456 sum -8.520 3.732 -8.152 12.369 Atomic orbital electron populations 1.22733 0.81842 1.02353 0.99507 1.87969 1.19002 1.27730 1.94833 1.23368 0.95342 0.84246 0.95157 0.91530 1.22893 0.98747 0.99383 0.97004 1.22280 0.96998 0.97866 0.98737 1.22554 0.98255 0.99662 0.96502 1.21122 0.91680 0.99185 0.83301 0.89257 1.46251 1.32926 1.55178 1.07069 1.18208 0.80713 0.80239 0.84842 1.90595 1.33474 1.39917 1.82089 1.20919 1.13192 1.32180 0.92009 0.91506 1.25707 0.94033 0.93388 1.00104 1.70038 1.10417 1.25483 1.33733 0.86339 0.78858 0.79051 0.82616 1.18846 1.20192 1.20189 0.94599 0.90016 0.94095 0.90518 0.91903 0.91780 0.91828 0.90934 0.91605 0.79166 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 101.05 1.10 1.50 16 2 O -0.38 -6.43 10.42 -35.23 -0.37 -6.80 16 3 C 0.08 1.25 3.05 -25.07 -0.08 1.17 16 4 H 0.07 0.99 7.41 -51.93 -0.38 0.60 16 5 C -0.14 -1.89 6.62 -24.74 -0.16 -2.05 16 6 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 7 C -0.13 -2.33 6.59 -25.61 -0.17 -2.50 16 8 C 0.15 3.12 3.00 -66.81 -0.20 2.92 16 9 H 0.09 2.14 7.49 -51.93 -0.39 1.75 16 10 N -0.76 -17.48 4.98 -54.13 -0.27 -17.75 16 11 C 0.56 16.15 7.74 -12.99 -0.10 16.05 16 12 O -0.58 -19.11 14.67 5.20 0.08 -19.03 16 13 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 14 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 15 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 16 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 17 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 18 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.40 7.92 -51.94 -0.41 0.99 16 29 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.38 7.63 8.34 -40.82 -0.34 7.29 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 264.90 15.07 3.99 3.99 Total: -1.00 -34.57 264.90 -5.61 -40.18 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.45 Total: 5.15 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.22 Total: 1.65 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.39 Total: -40.52 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.29 Total: -25.83 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.57 -5.61 -40.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050374236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.462 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds