Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50692 * 109.47368 * 120.00707 * 2 1 3 5 5 H 1.07996 * 120.00411 * 25.54730 * 4 2 1 6 6 C 1.37881 * 120.00102 * 205.54711 * 4 2 1 7 7 N 1.31516 * 120.00124 * 353.29251 * 6 4 2 8 8 Si 1.86797 * 120.00112 * 173.29155 * 6 4 2 9 9 H 1.48505 * 109.47024 * 90.00223 * 8 6 4 10 10 H 1.48501 * 109.47308 * 209.99929 * 8 6 4 11 11 H 1.48504 * 109.47300 * 330.00012 * 8 6 4 12 12 N 1.46509 * 109.46840 * 240.00285 * 2 1 3 13 13 C 1.34778 * 119.99541 * 84.99966 * 12 2 1 14 14 O 1.21280 * 120.00130 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99425 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.45977 * 300.69971 * 15 13 12 17 17 C 1.54512 * 110.50837 * 178.09512 * 15 13 12 18 18 C 1.54475 * 104.06315 * 241.35668 * 17 15 13 19 19 O 1.44415 * 104.80435 * 23.97847 * 18 17 15 20 20 C 1.44785 * 105.29753 * 319.45254 * 19 18 17 21 21 H 1.08999 * 109.47132 * 55.76780 * 1 2 3 22 22 H 1.08997 * 109.47302 * 175.77342 * 1 2 3 23 23 H 1.09006 * 109.46821 * 295.76995 * 1 2 3 24 24 H 0.97006 * 119.99883 * 354.60895 * 7 6 4 25 25 H 0.96992 * 119.99861 * 264.99551 * 12 2 1 26 26 H 1.09001 * 110.51307 * 0.02562 * 17 15 13 27 27 H 1.09001 * 110.51271 * 122.71026 * 17 15 13 28 28 H 1.09006 * 110.36995 * 142.81374 * 18 17 15 29 29 H 1.08997 * 110.37191 * 265.14616 * 18 17 15 30 30 H 1.08994 * 110.43033 * 281.77627 * 20 19 18 31 31 H 1.09001 * 110.48623 * 159.32035 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 1.4169 -1.4551 1.7131 6 6 3.2779 -0.4100 1.7397 7 7 4.0805 0.3971 1.0809 8 14 3.8253 -1.1493 3.3654 9 1 4.5134 -2.4412 3.1150 10 1 4.7585 -0.2150 4.0448 11 1 2.6392 -1.3794 4.2290 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8580 1.1585 -2.4116 15 6 2.6497 -0.7284 -3.5876 16 1 3.6445 -1.1378 -3.4114 17 6 2.6660 0.2317 -4.7982 18 6 1.6923 -0.4184 -5.8059 19 8 0.8145 -1.2325 -4.9982 20 6 1.6700 -1.8473 -4.0051 21 1 -0.3633 0.5781 -0.8496 22 1 -0.3634 -1.0248 -0.0757 23 1 -0.3633 0.4468 0.9255 24 1 3.8295 0.7188 0.2009 25 1 2.2490 -1.6317 -1.1528 26 1 2.3108 1.2201 -4.5066 27 1 3.6683 0.2950 -5.2220 28 1 1.1225 0.3480 -6.3314 29 1 2.2393 -1.0392 -6.5156 30 1 2.2144 -2.6861 -4.4387 31 1 1.0832 -2.1772 -3.1478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = -101.963568 kcal Electronic energy + Delta-G solvation = -14682.817035 eV Core-core repulsion = 12156.530880 eV Total energy + Delta-G solvation = -2526.286154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84108 -37.83706 -34.93486 -32.30578 -31.82916 -29.85740 -28.49771 -24.72931 -23.47566 -22.23262 -20.69305 -19.14746 -17.56414 -16.57772 -16.14915 -15.62530 -14.98843 -14.34157 -13.89836 -13.80155 -13.41102 -13.06908 -12.46781 -11.90613 -11.77449 -11.35734 -11.23388 -11.01838 -10.99298 -10.86665 -10.73046 -10.22702 -10.06376 -9.81046 -9.09670 -8.69223 -8.61364 -7.82942 -6.55984 -4.37065 3.32864 3.37155 3.42645 3.54050 4.09332 4.13010 4.39415 4.66693 5.02417 5.11950 5.20877 5.29846 5.43875 5.66660 5.72883 5.77995 5.91446 6.01522 6.36796 6.37122 6.56390 6.62623 6.82961 7.06618 7.24944 7.66178 7.90564 8.26036 8.58663 8.78554 9.20910 9.43599 10.80932 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.007923 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.584687 B = 3533.165761 C = 3638.903342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.236 3.764 3 H 0.052 0.948 4 C -0.608 4.608 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.890 5.890 8 Si 1.072 2.928 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.286 1.286 12 N -0.704 5.704 13 C 0.507 3.493 14 O -0.560 6.560 15 C -0.151 4.151 16 H 0.104 0.896 17 C -0.146 4.146 18 C 0.047 3.953 19 O -0.374 6.374 20 C 0.057 3.943 21 H 0.032 0.968 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.278 0.722 25 H 0.386 0.614 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -5.080 -9.123 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.647 4.647 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.524 5.524 8 Si 0.899 3.101 9 H -0.213 1.213 10 H -0.208 1.208 11 H -0.212 1.212 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.440 6.440 15 C -0.173 4.173 16 H 0.122 0.878 17 C -0.184 4.184 18 C -0.030 4.030 19 O -0.293 6.293 20 C -0.020 4.020 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.219 0.781 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.665 -4.235 -8.032 9.104 hybrid contribution -0.740 -0.546 -1.124 1.452 sum -1.405 -4.781 -9.155 10.424 Atomic orbital electron populations 1.21998 0.98488 0.99658 0.99759 1.18908 0.90025 0.94975 0.82415 0.93027 1.22158 1.04597 1.26740 1.11193 0.92517 1.26042 0.93185 0.94810 1.03898 1.70711 1.38143 1.28955 1.14546 0.83518 0.75854 0.75993 0.74732 1.21348 1.20756 1.21182 1.47648 1.64283 1.13539 1.09754 1.20280 0.78309 0.87525 0.84758 1.90577 1.52068 1.16342 1.85041 1.22771 1.01196 0.97458 0.95874 0.87783 1.22960 1.00127 1.01576 0.93734 1.23413 0.92169 0.93802 0.93629 1.89180 1.31416 1.63490 1.45221 1.23446 0.92104 0.94101 0.92321 0.94886 0.94251 0.92874 0.91109 0.78110 0.88181 0.90562 0.89197 0.92581 0.91589 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.46 37.16 0.35 -2.81 16 2 C 0.24 5.97 2.04 -69.08 -0.14 5.83 16 3 H 0.05 1.50 6.58 -51.93 -0.34 1.16 16 4 C -0.61 -16.15 8.50 -34.44 -0.29 -16.45 16 5 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 6 C 0.03 0.80 5.45 -17.82 -0.10 0.70 16 7 N -0.89 -26.09 13.56 55.43 0.75 -25.33 16 8 Si 1.07 23.82 29.91 -169.99 -5.08 18.73 16 9 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.70 -15.52 4.75 -54.93 -0.26 -15.78 16 13 C 0.51 10.86 7.07 -10.98 -0.08 10.78 16 14 O -0.56 -14.06 14.95 5.56 0.08 -13.98 16 15 C -0.15 -2.44 3.50 -90.20 -0.32 -2.75 16 16 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.15 -2.15 6.67 -25.16 -0.17 -2.32 16 18 C 0.05 0.61 7.63 37.93 0.29 0.90 16 19 O -0.37 -6.01 11.66 -35.23 -0.41 -6.42 16 20 C 0.06 0.83 7.19 37.93 0.27 1.10 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.28 8.34 6.93 -40.82 -0.28 8.06 16 25 H 0.39 7.71 8.52 -40.82 -0.35 7.36 16 26 H 0.10 1.74 6.50 -51.93 -0.34 1.41 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.41 7.59 -51.93 -0.39 1.01 16 LS Contribution 262.73 15.07 3.96 3.96 Total: -1.00 -31.48 262.73 -5.43 -36.91 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.29 Total: 6.94 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.18 Total: -5.03 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.49 Total: -41.11 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.33 Total: -20.40 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.08 Total: 18.73 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.48 -5.43 -36.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.052 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds