Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50692 * 109.47368 * 120.00707 * 2 1 3 5 5 H 1.07996 * 120.00411 * 25.54730 * 4 2 1 6 6 C 1.37881 * 120.00102 * 205.54711 * 4 2 1 7 7 N 1.31516 * 120.00124 * 353.29251 * 6 4 2 8 8 Si 1.86797 * 120.00112 * 173.29155 * 6 4 2 9 9 H 1.48505 * 109.47024 * 90.00223 * 8 6 4 10 10 H 1.48501 * 109.47308 * 209.99929 * 8 6 4 11 11 H 1.48504 * 109.47300 * 330.00012 * 8 6 4 12 12 N 1.46509 * 109.46840 * 240.00285 * 2 1 3 13 13 C 1.34778 * 119.99541 * 84.99966 * 12 2 1 14 14 O 1.21280 * 120.00130 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99425 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.45977 * 300.69971 * 15 13 12 17 17 C 1.54512 * 110.50837 * 178.09512 * 15 13 12 18 18 C 1.54475 * 104.06315 * 241.35668 * 17 15 13 19 19 O 1.44415 * 104.80435 * 23.97847 * 18 17 15 20 20 C 1.44785 * 105.29753 * 319.45254 * 19 18 17 21 21 H 1.08999 * 109.47132 * 55.76780 * 1 2 3 22 22 H 1.08997 * 109.47302 * 175.77342 * 1 2 3 23 23 H 1.09006 * 109.46821 * 295.76995 * 1 2 3 24 24 H 0.97006 * 119.99883 * 354.60895 * 7 6 4 25 25 H 0.96992 * 119.99861 * 264.99551 * 12 2 1 26 26 H 1.09001 * 110.51307 * 0.02562 * 17 15 13 27 27 H 1.09001 * 110.51271 * 122.71026 * 17 15 13 28 28 H 1.09006 * 110.36995 * 142.81374 * 18 17 15 29 29 H 1.08997 * 110.37191 * 265.14616 * 18 17 15 30 30 H 1.08994 * 110.43033 * 281.77627 * 20 19 18 31 31 H 1.09001 * 110.48623 * 159.32035 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 1.4169 -1.4551 1.7131 6 6 3.2779 -0.4100 1.7397 7 7 4.0805 0.3971 1.0809 8 14 3.8253 -1.1493 3.3654 9 1 4.5134 -2.4412 3.1150 10 1 4.7585 -0.2150 4.0448 11 1 2.6392 -1.3794 4.2290 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8580 1.1585 -2.4116 15 6 2.6497 -0.7284 -3.5876 16 1 3.6445 -1.1378 -3.4114 17 6 2.6660 0.2317 -4.7982 18 6 1.6923 -0.4184 -5.8059 19 8 0.8145 -1.2325 -4.9982 20 6 1.6700 -1.8473 -4.0051 21 1 -0.3633 0.5781 -0.8496 22 1 -0.3634 -1.0248 -0.0757 23 1 -0.3633 0.4468 0.9255 24 1 3.8295 0.7188 0.2009 25 1 2.2490 -1.6317 -1.1528 26 1 2.3108 1.2201 -4.5066 27 1 3.6683 0.2950 -5.2220 28 1 1.1225 0.3480 -6.3314 29 1 2.2393 -1.0392 -6.5156 30 1 2.2144 -2.6861 -4.4387 31 1 1.0832 -2.1772 -3.1478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = -125.258315 kcal Electronic energy + Delta-G solvation = -14683.827171 eV Core-core repulsion = 12156.530880 eV Total energy + Delta-G solvation = -2527.296290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.29442 -39.33465 -36.88153 -34.20354 -33.26090 -31.48971 -29.84055 -26.79090 -24.85523 -23.61845 -22.36046 -20.83906 -19.38095 -18.16577 -17.40820 -17.06989 -16.39761 -15.83988 -15.68923 -15.57926 -15.20281 -14.74558 -13.81764 -13.66790 -13.23626 -12.95823 -12.82231 -12.62509 -12.46161 -12.32346 -12.08324 -11.92286 -11.89497 -11.15468 -10.79920 -10.74019 -10.45629 -9.72045 -8.72360 -6.54232 1.56126 1.62338 1.76590 1.82465 2.45734 2.55368 2.98521 3.22225 3.45472 3.83747 3.96017 4.16095 4.27602 4.39908 4.50256 4.62025 4.64521 4.69361 4.73297 4.79191 4.89842 5.14326 5.18338 5.25397 5.69555 5.78270 5.95401 6.11154 6.42118 6.94843 7.35344 7.48913 8.63332 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.007923 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.584687 B = 3533.165761 C = 3638.903342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.237 3.763 3 H 0.003 0.997 4 C -0.614 4.614 5 H 0.064 0.936 6 C -0.019 4.019 7 N -0.920 5.920 8 Si 1.122 2.878 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.701 5.701 13 C 0.498 3.502 14 O -0.605 6.605 15 C -0.146 4.146 16 H 0.128 0.872 17 C -0.147 4.147 18 C 0.048 3.952 19 O -0.402 6.402 20 C 0.061 3.939 21 H 0.025 0.975 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.259 0.741 25 H 0.398 0.602 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -7.262 -9.700 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.136 3.864 3 H 0.021 0.979 4 C -0.652 4.652 5 H 0.082 0.918 6 C -0.220 4.220 7 N -0.555 5.555 8 Si 0.943 3.057 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.350 5.350 13 C 0.285 3.715 14 O -0.488 6.488 15 C -0.168 4.168 16 H 0.145 0.855 17 C -0.185 4.185 18 C -0.028 4.028 19 O -0.321 6.321 20 C -0.015 4.015 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.233 0.767 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.424 -6.451 -8.635 10.786 hybrid contribution -0.874 0.183 -0.998 1.339 sum -1.298 -6.268 -9.633 11.565 Atomic orbital electron populations 1.21878 0.96532 1.00765 0.99689 1.18675 0.91525 0.92623 0.83613 0.97935 1.22394 1.04595 1.26497 1.11714 0.91800 1.27508 0.93517 0.94317 1.06672 1.70853 1.39168 1.31273 1.14228 0.82876 0.76089 0.75788 0.70935 1.19269 1.21465 1.19288 1.47219 1.64430 1.13982 1.09385 1.21194 0.77214 0.87142 0.85945 1.90557 1.53795 1.18525 1.85909 1.22814 1.02540 0.98110 0.93311 0.85456 1.22987 1.02235 0.99496 0.93786 1.23594 0.91733 0.94219 0.93256 1.89153 1.32946 1.64115 1.45908 1.23558 0.91568 0.94169 0.92251 0.95551 0.92282 0.92499 0.93130 0.76688 0.91688 0.87660 0.88572 0.88975 0.87489 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 9.46 71.98 0.68 -5.19 16 2 C 0.24 12.21 2.04 44.24 0.09 12.30 16 3 H 0.00 0.16 6.58 -2.39 -0.02 0.14 16 4 C -0.61 -32.51 8.50 25.60 0.22 -32.29 16 5 H 0.06 3.25 7.82 -2.91 -0.02 3.22 16 6 C -0.02 -1.01 5.45 84.66 0.46 -0.54 16 7 N -0.92 -55.07 13.56 21.45 0.29 -54.77 16 8 Si 1.12 47.10 29.91 68.60 2.05 49.15 16 9 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.70 -31.15 4.75 -446.09 -2.12 -33.27 16 13 C 0.50 21.58 7.07 87.66 0.62 22.20 16 14 O -0.60 -31.63 14.95 -3.03 -0.05 -31.67 16 15 C -0.15 -4.47 3.50 -10.52 -0.04 -4.51 16 16 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 17 C -0.15 -4.09 6.67 31.61 0.21 -3.88 16 18 C 0.05 1.12 7.63 72.48 0.55 1.68 16 19 O -0.40 -12.00 11.66 -148.98 -1.74 -13.73 16 20 C 0.06 1.59 7.19 72.48 0.52 2.12 16 21 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 24 H 0.26 16.18 6.93 -92.70 -0.64 15.53 16 25 H 0.40 15.66 8.52 -92.71 -0.79 14.87 16 26 H 0.06 2.29 6.50 -2.39 -0.02 2.28 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.39 7.59 -2.39 -0.02 2.37 16 Total: -1.00 -70.14 262.73 2.22 -67.92 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.46 Total: 24.49 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.32 Total: -8.12 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -1.83 Total: -88.04 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.78 Total: -45.41 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Total: -70.14 2.22 -67.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.335 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds