Wall clock time and date at job start Sun Mar 29 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.45914 * 302.60849 * 15 13 12 17 17 C 1.54501 * 110.50994 * 180.02562 * 15 13 12 18 18 C 1.54488 * 104.06489 * 241.35760 * 17 15 13 19 19 O 1.44424 * 104.80019 * 23.97873 * 18 17 15 20 20 C 1.44429 * 105.27704 * 319.49003 * 19 18 17 21 21 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 26 26 H 1.08998 * 110.51543 * 0.02562 * 17 15 13 27 27 H 1.09000 * 110.51111 * 122.71213 * 17 15 13 28 28 H 1.08997 * 110.37318 * 142.80845 * 18 17 15 29 29 H 1.09002 * 110.36822 * 265.15061 * 18 17 15 30 30 H 1.09003 * 110.37147 * 281.68256 * 20 19 18 31 31 H 1.09000 * 110.37369 * 159.34630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 1 2.0127 -1.5826 3.8208 17 6 2.7098 0.2435 4.7871 18 6 4.2048 0.2667 5.1760 19 8 4.9050 -0.1169 3.9725 20 6 4.1141 -1.1779 3.3938 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.9028 -0.5285 -4.4375 25 1 2.2491 -1.6317 1.1527 26 1 2.3766 1.2379 4.4902 27 1 2.1060 -0.1313 5.6136 28 1 4.5012 1.2693 5.4842 29 1 4.4005 -0.4500 5.9736 30 1 4.2960 -2.1160 3.9182 31 1 4.3409 -1.2850 2.3331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391211.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:32 Heat of formation + Delta-G solvation = -84.837815 kcal Electronic energy + Delta-G solvation = -14566.750639 eV Core-core repulsion = 12041.207113 eV Total energy + Delta-G solvation = -2525.543526 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03091 -38.03571 -35.03744 -32.52563 -32.02711 -30.17848 -28.70236 -25.21171 -23.64431 -22.35619 -20.53301 -19.46709 -17.53200 -16.44295 -16.26214 -15.65203 -15.41348 -14.93305 -14.10231 -13.96074 -13.21619 -12.96546 -12.65862 -12.22824 -12.02403 -11.72633 -11.42633 -11.38251 -11.08323 -10.86429 -10.81756 -10.19394 -9.91336 -9.65737 -9.23945 -9.08657 -8.76127 -8.17307 -6.21358 -4.23892 3.15884 3.23241 3.35409 3.40217 3.87779 4.02786 4.31574 4.52385 4.92003 5.03979 5.12617 5.13633 5.26259 5.50372 5.60901 5.73135 5.74936 5.88153 6.23437 6.30199 6.36833 6.54924 6.77852 6.85095 7.18226 7.28518 7.51451 8.13960 8.51435 8.75122 8.91749 9.39545 10.90824 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.007951 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.991015 B = 3520.730400 C = 3751.243120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.701 5.701 13 C 0.512 3.488 14 O -0.551 6.551 15 C -0.148 4.148 16 H 0.106 0.894 17 C -0.147 4.147 18 C 0.046 3.954 19 O -0.371 6.371 20 C 0.055 3.945 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.267 0.733 25 H 0.395 0.605 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -1.637 14.727 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.348 5.348 13 C 0.297 3.703 14 O -0.430 6.430 15 C -0.170 4.170 16 H 0.125 0.875 17 C -0.185 4.185 18 C -0.031 4.031 19 O -0.289 6.289 20 C -0.022 4.022 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.228 0.772 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.446 -0.707 14.439 14.463 hybrid contribution -0.782 0.068 -0.234 0.819 sum -0.336 -0.639 14.205 14.223 Atomic orbital electron populations 1.22448 0.99332 1.00824 0.99298 1.19111 0.90107 0.94721 0.82819 0.93376 1.21042 1.33303 1.14443 0.88552 0.90172 1.24835 0.95497 0.96697 0.95522 1.69870 1.44885 1.40112 0.98045 0.86871 0.80468 0.83638 0.77482 1.20326 1.18675 1.22099 1.46167 1.65126 1.13758 1.09792 1.20154 0.78130 0.87368 0.84640 1.90615 1.51408 1.16099 1.84860 1.22730 0.98893 1.00040 0.95314 0.87549 1.22982 0.97076 1.02209 0.96201 1.23428 0.90986 1.00748 0.87957 1.89166 1.47536 1.53700 1.38515 1.23427 0.87526 0.90708 1.00540 0.93432 0.92816 0.94606 0.92274 0.77196 0.88124 0.90444 0.89098 0.92486 0.91419 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.97 37.16 0.33 -3.29 16 2 C 0.24 5.68 2.15 -69.08 -0.15 5.54 16 3 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 4 C -0.54 -14.55 9.31 -34.44 -0.32 -14.87 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 8 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 N -0.70 -13.90 4.88 -54.93 -0.27 -14.17 16 13 C 0.51 9.72 7.03 -10.98 -0.08 9.65 16 14 O -0.55 -12.57 14.94 5.56 0.08 -12.49 16 15 C -0.15 -2.02 3.51 -90.21 -0.32 -2.34 16 16 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.15 -1.85 6.67 -25.16 -0.17 -2.02 16 18 C 0.05 0.54 7.63 37.94 0.29 0.83 16 19 O -0.37 -5.66 11.65 -35.23 -0.41 -6.07 16 20 C 0.06 0.73 7.17 37.94 0.27 1.00 16 21 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16 26 H 0.10 1.54 6.50 -51.93 -0.34 1.20 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.41 7.72 -51.93 -0.40 1.01 16 LS Contribution 254.16 15.07 3.83 3.83 Total: -1.00 -32.36 254.16 -4.53 -36.89 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.16 Total: 3.34 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.23 Total: -3.40 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.51 Total: -39.92 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.33 Total: -18.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.36 -4.53 -36.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391211.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.948 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds