Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 H 1.09003 * 110.45914 * 302.60849 * 15 13 12 17 17 C 1.54501 * 110.50994 * 180.02562 * 15 13 12 18 18 C 1.54488 * 104.06489 * 241.35760 * 17 15 13 19 19 O 1.44424 * 104.80019 * 23.97873 * 18 17 15 20 20 C 1.44429 * 105.27704 * 319.49003 * 19 18 17 21 21 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 22 22 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 26 26 H 1.08998 * 110.51543 * 0.02562 * 17 15 13 27 27 H 1.09000 * 110.51111 * 122.71213 * 17 15 13 28 28 H 1.08997 * 110.37318 * 142.80845 * 18 17 15 29 29 H 1.09002 * 110.36822 * 265.15061 * 18 17 15 30 30 H 1.09003 * 110.37147 * 281.68256 * 20 19 18 31 31 H 1.09000 * 110.37369 * 159.34630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 1 2.0127 -1.5826 3.8208 17 6 2.7098 0.2435 4.7871 18 6 4.2048 0.2667 5.1760 19 8 4.9050 -0.1169 3.9725 20 6 4.1141 -1.1779 3.3938 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.9028 -0.5285 -4.4375 25 1 2.2491 -1.6317 1.1527 26 1 2.3766 1.2379 4.4902 27 1 2.1060 -0.1313 5.6136 28 1 4.5012 1.2693 5.4842 29 1 4.4005 -0.4500 5.9736 30 1 4.2960 -2.1160 3.9182 31 1 4.3409 -1.2850 2.3331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391211.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = -110.369900 kcal Electronic energy + Delta-G solvation = -14567.857793 eV Core-core repulsion = 12041.207113 eV Total energy + Delta-G solvation = -2526.650680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33127 -39.36662 -36.86097 -34.45557 -33.32506 -31.76263 -29.86492 -27.24959 -24.92563 -23.56021 -22.10677 -21.00906 -19.16449 -18.05248 -17.45283 -17.25183 -16.88607 -16.16741 -15.60820 -15.54229 -14.93258 -14.73064 -14.17039 -13.93738 -13.49838 -13.29888 -12.87337 -12.74563 -12.40617 -12.29057 -12.14408 -11.86696 -11.64325 -11.30797 -10.98313 -10.88395 -10.51628 -9.90428 -8.40135 -6.45979 1.24908 1.33779 1.43108 1.69962 2.24307 2.40700 2.95878 3.05718 3.47792 3.81659 3.98468 4.22218 4.31987 4.41694 4.47712 4.55539 4.67845 4.69229 4.76057 4.84733 4.94713 4.98636 5.22182 5.30646 5.41565 5.63139 5.84435 6.11942 6.55603 6.84620 7.17230 7.42592 8.75085 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051936 B = 0.007951 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.991015 B = 3520.730400 C = 3751.243120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.240 3.760 3 H 0.017 0.983 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.938 3.062 9 H -0.257 1.257 10 H -0.266 1.266 11 H -0.291 1.291 12 N -0.700 5.700 13 C 0.506 3.494 14 O -0.594 6.594 15 C -0.139 4.139 16 H 0.147 0.853 17 C -0.146 4.146 18 C 0.043 3.957 19 O -0.407 6.407 20 C 0.054 3.946 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.271 0.729 25 H 0.408 0.592 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -2.359 16.726 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.035 0.965 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.571 5.571 8 Si 0.766 3.234 9 H -0.183 1.183 10 H -0.191 1.191 11 H -0.219 1.219 12 N -0.348 5.348 13 C 0.294 3.706 14 O -0.476 6.476 15 C -0.161 4.161 16 H 0.164 0.836 17 C -0.184 4.184 18 C -0.033 4.033 19 O -0.326 6.326 20 C -0.022 4.022 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.244 0.756 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.267 -1.459 16.461 16.528 hybrid contribution -0.482 0.271 -0.810 0.980 sum -0.750 -1.188 15.651 15.714 Atomic orbital electron populations 1.22329 0.97650 1.01833 0.99399 1.18758 0.91344 0.92988 0.83392 0.96518 1.21269 1.32434 1.13652 0.89911 0.92317 1.25553 0.96846 0.99277 0.95376 1.69972 1.46604 1.41883 0.98653 0.86014 0.79924 0.80374 0.77114 1.18284 1.19124 1.21858 1.46015 1.65326 1.14376 1.09119 1.21139 0.76838 0.87021 0.85612 1.90599 1.53068 1.18204 1.85687 1.22816 0.99766 1.00962 0.92514 0.83552 1.23008 0.98285 1.00285 0.96773 1.23644 0.89971 1.02032 0.87645 1.89132 1.48654 1.54670 1.40140 1.23562 0.86610 0.91894 1.00172 0.94152 0.91322 0.93609 0.92003 0.75603 0.91415 0.86846 0.88938 0.89001 0.87270 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.72 8.97 71.98 0.65 -6.07 16 2 C 0.24 11.56 2.15 44.24 0.10 11.65 16 3 H 0.02 0.92 6.63 -2.38 -0.02 0.91 16 4 C -0.53 -29.36 9.31 25.60 0.24 -29.12 16 5 H 0.06 3.40 7.98 -2.91 -0.02 3.38 16 6 C 0.03 1.67 5.45 84.66 0.46 2.13 16 7 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 8 Si 0.94 45.25 24.37 68.60 1.67 46.92 16 9 H -0.26 -11.55 6.87 99.48 0.68 -10.87 16 10 H -0.27 -12.93 6.53 99.48 0.65 -12.28 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 N -0.70 -27.28 4.88 -446.08 -2.18 -29.46 16 13 C 0.51 18.74 7.03 87.66 0.62 19.35 16 14 O -0.59 -27.20 14.94 -3.03 -0.05 -27.24 16 15 C -0.14 -3.41 3.51 -10.53 -0.04 -3.45 16 16 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 17 C -0.15 -3.27 6.67 31.61 0.21 -3.05 16 18 C 0.04 0.90 7.63 72.49 0.55 1.45 16 19 O -0.41 -11.69 11.65 -148.98 -1.74 -13.43 16 20 C 0.05 1.29 7.17 72.49 0.52 1.81 16 21 H 0.04 1.80 3.27 -2.39 -0.01 1.80 16 22 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.41 13.57 8.54 -92.71 -0.79 12.78 16 26 H 0.07 2.01 6.50 -2.39 -0.02 1.99 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.20 7.72 -2.39 -0.02 2.18 16 Total: -1.00 -71.14 254.16 1.58 -69.57 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.26 Total: 14.74 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 3.30 Total: -5.30 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.88 Total: -85.26 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.78 Total: -40.67 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -71.14 1.58 -69.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391211.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.803 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds