Wall clock time and date at job start Sun Mar 29 2020 21:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47151 * 2 1 4 4 C 1.50699 * 109.47032 * 119.99846 * 2 1 3 5 5 H 1.08008 * 120.00115 * 119.99516 * 4 2 1 6 6 C 1.37878 * 120.00233 * 299.99956 * 4 2 1 7 7 N 1.31513 * 119.99846 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47176 * 59.99837 * 8 6 4 10 10 H 1.48502 * 109.46867 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46898 * 299.99586 * 8 6 4 12 12 N 1.46497 * 109.46974 * 239.99705 * 2 1 3 13 13 C 1.34772 * 119.99925 * 84.99907 * 12 2 1 14 14 O 1.21276 * 120.00201 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00020 * 179.97438 * 13 12 2 16 16 H 1.08999 * 110.79812 * 56.37854 * 15 13 12 17 17 C 1.54807 * 110.90519 * 180.02562 * 15 13 12 18 18 C 1.54105 * 104.18504 * 139.11908 * 17 15 13 19 19 O 1.43746 * 107.42259 * 1.95340 * 18 17 15 20 20 C 1.44586 * 106.86832 * 333.67423 * 19 18 17 21 21 H 1.09000 * 109.47773 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47179 * 299.99860 * 1 2 3 23 23 H 1.09000 * 109.47035 * 60.00068 * 1 2 3 24 24 H 0.97004 * 120.00116 * 180.02562 * 7 6 4 25 25 H 0.97009 * 120.00092 * 265.00466 * 12 2 1 26 26 H 1.08996 * 110.48875 * 20.44177 * 17 15 13 27 27 H 1.09000 * 110.48902 * 257.79051 * 17 15 13 28 28 H 1.09002 * 109.88076 * 121.45430 * 18 17 15 29 29 H 1.08996 * 109.87584 * 242.45546 * 18 17 15 30 30 H 1.08999 * 110.50225 * 281.37988 * 20 19 18 31 31 H 1.08988 * 110.64114 * 158.44257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8278 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0182 -0.6907 -1.1961 13 6 2.1469 -0.0184 -2.3571 14 8 1.8589 1.1584 -2.4115 15 6 2.6498 -0.7287 -3.5874 16 1 2.0286 -1.5949 -3.8153 17 6 2.7155 0.2376 -4.7951 18 6 4.0351 -0.1298 -5.5013 19 8 4.6174 -1.2288 -4.7807 20 6 4.1343 -1.1418 -3.4207 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7095 1.1619 3.4844 25 1 2.2489 -1.6319 -1.1525 26 1 2.7404 1.2727 -4.4545 27 1 1.8682 0.0743 -5.4610 28 1 3.8344 -0.4264 -6.5308 29 1 4.7130 0.7235 -5.4871 30 1 4.6848 -0.3804 -2.8680 31 1 4.2102 -2.1086 -2.9234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:34 Heat of formation + Delta-G solvation = -95.218309 kcal Electronic energy + Delta-G solvation = -14412.747036 eV Core-core repulsion = 11886.753378 eV Total energy + Delta-G solvation = -2525.993658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87500 -38.03502 -34.85995 -32.52295 -31.96717 -29.67140 -28.32043 -25.28770 -23.46997 -22.25813 -20.50928 -19.34917 -17.53018 -16.54215 -15.94855 -15.30936 -15.15356 -14.78332 -14.28401 -13.67238 -13.25190 -12.91337 -12.45378 -12.09278 -11.74502 -11.40483 -11.27486 -11.05631 -10.97778 -10.78746 -10.62645 -10.34848 -10.25555 -9.70323 -9.09686 -9.05749 -8.57736 -7.96869 -6.14706 -4.24462 3.24017 3.27173 3.29635 3.30949 3.78793 4.18354 4.37817 4.55069 4.92010 5.04685 5.17598 5.22741 5.29049 5.56913 5.73234 5.79286 5.83228 6.02460 6.19331 6.79016 6.80631 6.93051 7.11670 7.41104 7.51997 7.66165 7.87793 8.11878 8.61258 8.74183 9.06254 9.43173 10.91252 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051002 B = 0.007176 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.862890 B = 3900.894687 C = 4267.935441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.510 3.490 14 O -0.552 6.552 15 C -0.147 4.147 16 H 0.104 0.896 17 C -0.142 4.142 18 C 0.047 3.953 19 O -0.380 6.380 20 C 0.061 3.939 21 H 0.026 0.974 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.265 0.735 25 H 0.389 0.611 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -4.316 -10.647 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.431 6.431 15 C -0.169 4.169 16 H 0.123 0.877 17 C -0.180 4.180 18 C -0.030 4.030 19 O -0.299 6.299 20 C -0.016 4.016 21 H 0.046 0.954 22 H 0.109 0.891 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.338 -3.491 -10.583 11.633 hybrid contribution 0.154 -0.779 0.982 1.263 sum 3.492 -4.271 -9.601 11.073 Atomic orbital electron populations 1.22080 0.98446 0.99146 1.00918 1.18761 0.91064 0.93999 0.80007 0.93353 1.21181 1.32606 1.13286 0.90327 0.92077 1.24893 0.94770 0.94943 0.99083 1.69892 1.35782 1.22386 1.24042 0.86495 0.79182 0.79586 0.81764 1.20153 1.21101 1.20134 1.46545 1.64712 1.13565 1.10494 1.20030 0.78741 0.87369 0.84453 1.90640 1.51442 1.16094 1.84927 1.22912 0.98652 1.00121 0.95225 0.87743 1.22868 0.97778 1.01765 0.95600 1.23187 0.93641 0.89815 0.96343 1.88884 1.70456 1.48940 1.21595 1.23520 0.91059 1.02497 0.84534 0.95436 0.89110 0.96679 0.92478 0.77857 0.88523 0.90379 0.89993 0.92319 0.91393 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.81 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.71 -14.42 5.07 -54.94 -0.28 -14.70 16 13 C 0.51 9.96 7.11 -10.98 -0.08 9.89 16 14 O -0.55 -12.99 15.12 5.56 0.08 -12.90 16 15 C -0.15 -2.14 3.52 -89.76 -0.32 -2.46 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.14 -1.90 6.43 -25.20 -0.16 -2.06 16 18 C 0.05 0.56 7.69 37.73 0.29 0.85 16 19 O -0.38 -5.31 11.54 -35.23 -0.41 -5.71 16 20 C 0.06 0.83 7.17 38.21 0.27 1.10 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 26 H 0.10 1.48 6.86 -51.93 -0.36 1.12 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.10 1.16 8.14 -51.94 -0.42 0.74 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -30.28 261.80 -5.60 -35.88 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.33 Total: 4.41 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.22 Total: -2.21 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.88 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.32 Total: -18.62 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.28 -5.60 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.343 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds