Wall clock time and date at job start Sun Mar 29 2020 21:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47151 * 2 1 4 4 C 1.50699 * 109.47032 * 119.99846 * 2 1 3 5 5 H 1.08008 * 120.00115 * 119.99516 * 4 2 1 6 6 C 1.37878 * 120.00233 * 299.99956 * 4 2 1 7 7 N 1.31513 * 119.99846 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47176 * 59.99837 * 8 6 4 10 10 H 1.48502 * 109.46867 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46898 * 299.99586 * 8 6 4 12 12 N 1.46497 * 109.46974 * 239.99705 * 2 1 3 13 13 C 1.34772 * 119.99925 * 84.99907 * 12 2 1 14 14 O 1.21276 * 120.00201 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00020 * 179.97438 * 13 12 2 16 16 H 1.08999 * 110.79812 * 56.37854 * 15 13 12 17 17 C 1.54807 * 110.90519 * 180.02562 * 15 13 12 18 18 C 1.54105 * 104.18504 * 139.11908 * 17 15 13 19 19 O 1.43746 * 107.42259 * 1.95340 * 18 17 15 20 20 C 1.44586 * 106.86832 * 333.67423 * 19 18 17 21 21 H 1.09000 * 109.47773 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47179 * 299.99860 * 1 2 3 23 23 H 1.09000 * 109.47035 * 60.00068 * 1 2 3 24 24 H 0.97004 * 120.00116 * 180.02562 * 7 6 4 25 25 H 0.97009 * 120.00092 * 265.00466 * 12 2 1 26 26 H 1.08996 * 110.48875 * 20.44177 * 17 15 13 27 27 H 1.09000 * 110.48902 * 257.79051 * 17 15 13 28 28 H 1.09002 * 109.88076 * 121.45430 * 18 17 15 29 29 H 1.08996 * 109.87584 * 242.45546 * 18 17 15 30 30 H 1.08999 * 110.50225 * 281.37988 * 20 19 18 31 31 H 1.08988 * 110.64114 * 158.44257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8278 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0182 -0.6907 -1.1961 13 6 2.1469 -0.0184 -2.3571 14 8 1.8589 1.1584 -2.4115 15 6 2.6498 -0.7287 -3.5874 16 1 2.0286 -1.5949 -3.8153 17 6 2.7155 0.2376 -4.7951 18 6 4.0351 -0.1298 -5.5013 19 8 4.6174 -1.2288 -4.7807 20 6 4.1343 -1.1418 -3.4207 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7095 1.1619 3.4844 25 1 2.2489 -1.6319 -1.1525 26 1 2.7404 1.2727 -4.4545 27 1 1.8682 0.0743 -5.4610 28 1 3.8344 -0.4264 -6.5308 29 1 4.7130 0.7235 -5.4871 30 1 4.6848 -0.3804 -2.8680 31 1 4.2102 -2.1086 -2.9234 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:34 Heat of formation + Delta-G solvation = -117.214883 kcal Electronic energy + Delta-G solvation = -14413.700879 eV Core-core repulsion = 11886.753378 eV Total energy + Delta-G solvation = -2526.947501 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23268 -39.42081 -36.74827 -34.38052 -33.25573 -31.16255 -29.78085 -27.35191 -24.82449 -23.48276 -22.16158 -20.97494 -19.10107 -17.89461 -17.46494 -17.09023 -16.42878 -16.23881 -15.78441 -15.22868 -14.69657 -14.45095 -14.11810 -13.67535 -13.33705 -12.99462 -12.88683 -12.77494 -12.38805 -12.30112 -12.26588 -12.11439 -11.76199 -11.12657 -10.75308 -10.72052 -10.57629 -9.79063 -8.18194 -6.36036 1.45476 1.47392 1.55197 1.72153 2.31628 2.52365 3.02521 3.12558 3.42188 3.84660 3.93035 4.17401 4.22959 4.32450 4.70451 4.74842 4.75954 4.84318 4.90743 5.01877 5.08100 5.11898 5.41967 5.59418 5.67233 5.78211 5.88652 6.08605 6.71634 6.92154 7.31178 7.51356 8.87991 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051002 B = 0.007176 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.862890 B = 3900.894687 C = 4267.935441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.701 5.701 13 C 0.508 3.492 14 O -0.597 6.597 15 C -0.137 4.137 16 H 0.134 0.866 17 C -0.143 4.143 18 C 0.047 3.953 19 O -0.387 6.387 20 C 0.064 3.936 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.012 0.988 24 H 0.266 0.734 25 H 0.406 0.594 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -6.464 -11.345 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.349 5.349 13 C 0.294 3.706 14 O -0.479 6.479 15 C -0.159 4.159 16 H 0.152 0.848 17 C -0.181 4.181 18 C -0.029 4.029 19 O -0.306 6.306 20 C -0.013 4.013 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.242 0.758 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.074 -5.677 -11.312 13.296 hybrid contribution -0.073 -0.050 1.144 1.147 sum 4.001 -5.727 -10.168 12.336 Atomic orbital electron populations 1.21905 0.98301 0.99554 0.99568 1.18358 0.91154 0.91936 0.82027 0.98423 1.21534 1.32698 1.13662 0.90745 0.90637 1.25816 0.94840 0.95565 1.02393 1.70048 1.36995 1.23933 1.24704 0.85386 0.78650 0.78728 0.77512 1.19561 1.21268 1.18774 1.46288 1.64755 1.14292 1.09609 1.20883 0.77422 0.86907 0.85364 1.90625 1.53173 1.18381 1.85748 1.22911 0.99622 1.00699 0.92649 0.84803 1.22889 0.99640 0.99964 0.95573 1.23316 0.92614 0.89665 0.97292 1.88886 1.70711 1.49525 1.21512 1.23527 0.89810 1.03245 0.84728 0.93935 0.91530 0.96922 0.92534 0.75816 0.91137 0.88367 0.87141 0.92024 0.92997 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.82 2.56 44.24 0.11 13.93 16 3 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 N -0.70 -28.25 5.07 -446.11 -2.26 -30.51 16 13 C 0.51 19.67 7.11 87.66 0.62 20.30 16 14 O -0.60 -28.88 15.12 -3.02 -0.05 -28.92 16 15 C -0.14 -3.70 3.52 -10.24 -0.04 -3.74 16 16 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 17 C -0.14 -3.55 6.43 31.58 0.20 -3.35 16 18 C 0.05 1.00 7.69 72.36 0.56 1.56 16 19 O -0.39 -9.71 11.54 -148.98 -1.72 -11.43 16 20 C 0.06 1.59 7.17 72.66 0.52 2.11 16 21 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 23 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.41 13.47 8.54 -92.70 -0.79 12.68 16 26 H 0.07 2.16 6.86 -2.39 -0.02 2.14 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 31 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -66.19 261.80 1.90 -64.30 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.33 Total: 17.86 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 3.32 Total: -2.53 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.02 Total: -82.82 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.76 Total: -40.35 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -66.19 1.90 -64.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.917 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds