Wall clock time and date at job start Sun Mar 29 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46944 * 240.00418 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.08999 * 110.74726 * 62.01653 * 15 13 12 17 17 C 1.55303 * 110.84936 * 185.71748 * 15 13 12 18 18 C 1.54950 * 100.94049 * 152.32581 * 17 15 13 19 19 O 1.43652 * 105.13529 * 323.55239 * 18 17 15 20 20 C 1.43237 * 109.96676 * 24.42999 * 19 18 17 21 21 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.08999 * 111.12360 * 270.23954 * 17 15 13 27 27 H 1.08991 * 111.12664 * 34.40457 * 17 15 13 28 28 H 1.08999 * 110.30579 * 204.64145 * 18 17 15 29 29 H 1.08994 * 110.39726 * 82.51095 * 18 17 15 30 30 H 1.09004 * 109.82835 * 238.76812 * 20 19 18 31 31 H 1.09008 * 109.90249 * 117.84854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 1 3.6733 -1.0960 3.4258 17 6 2.5959 0.2052 4.8261 18 6 2.4374 -0.8337 5.9648 19 8 1.6049 -1.8677 5.4159 20 6 1.7122 -1.8753 3.9875 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 3.5189 0.7740 4.9390 27 1 1.7320 0.8678 4.7758 28 1 1.9538 -0.3773 6.8285 29 1 3.4089 -1.2397 6.2465 30 1 0.7299 -1.7177 3.5422 31 1 2.1219 -2.8278 3.6512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:37 Heat of formation + Delta-G solvation = -95.177075 kcal Electronic energy + Delta-G solvation = -14426.575383 eV Core-core repulsion = 11900.583513 eV Total energy + Delta-G solvation = -2525.991870 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90644 -38.05188 -34.85370 -32.55627 -32.00193 -29.72181 -28.35419 -25.28295 -23.34094 -22.28966 -20.65777 -19.33310 -17.49649 -16.69207 -15.96050 -15.47622 -15.04344 -14.71225 -14.01449 -13.89665 -13.23241 -12.99152 -12.41978 -12.22511 -11.63944 -11.40304 -11.33578 -11.05774 -10.93956 -10.90547 -10.72727 -10.32456 -10.26568 -9.59009 -9.08094 -9.03356 -8.58210 -7.96652 -6.15018 -4.24575 3.21897 3.26700 3.30025 3.32597 3.78198 4.08654 4.35674 4.44531 4.97032 5.04660 5.17253 5.17685 5.24739 5.51889 5.71561 5.73692 5.85178 5.96083 6.23032 6.79736 6.92255 6.93999 7.12182 7.41202 7.52248 7.66363 7.88238 8.12060 8.61159 8.74427 9.06176 9.43142 10.91056 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060045 B = 0.006815 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.206683 B = 4107.856061 C = 4256.167222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.511 3.489 14 O -0.551 6.551 15 C -0.149 4.149 16 H 0.106 0.894 17 C -0.134 4.134 18 C 0.050 3.950 19 O -0.385 6.385 20 C 0.063 3.937 21 H 0.090 0.910 22 H 0.027 0.973 23 H 0.014 0.986 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -4.910 11.090 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.295 3.705 14 O -0.430 6.430 15 C -0.171 4.171 16 H 0.124 0.876 17 C -0.172 4.172 18 C -0.026 4.026 19 O -0.304 6.304 20 C -0.014 4.014 21 H 0.109 0.891 22 H 0.046 0.954 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.840 -4.078 11.058 12.123 hybrid contribution 0.616 -0.769 -1.112 1.486 sum 3.456 -4.848 9.945 11.591 Atomic orbital electron populations 1.22078 0.98390 0.99168 1.00934 1.18775 0.91104 0.94003 0.80017 0.93353 1.21254 1.32447 1.13235 0.90314 0.92001 1.24900 0.94787 0.94952 0.99111 1.69913 1.35896 1.22455 1.23829 0.86381 0.78615 0.79509 0.82519 1.19738 1.20828 1.20863 1.46559 1.64756 1.13481 1.10605 1.20004 0.78778 0.87381 0.84329 1.90658 1.51334 1.16035 1.84944 1.22958 1.01435 0.97138 0.95578 0.87610 1.23121 1.04594 0.97763 0.91735 1.23421 0.94762 0.87682 0.96763 1.88381 1.67506 1.55221 1.19313 1.23075 0.99595 0.97292 0.81401 0.89104 0.95405 0.96668 0.92589 0.77879 0.89624 0.88960 0.89673 0.92210 0.90606 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.71 -14.50 5.01 -54.93 -0.28 -14.78 16 13 C 0.51 10.04 6.99 -10.98 -0.08 9.96 16 14 O -0.55 -13.07 15.42 5.55 0.09 -12.99 16 15 C -0.15 -2.15 3.39 -89.83 -0.30 -2.45 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 17 C -0.13 -1.77 6.23 -24.48 -0.15 -1.92 16 18 C 0.05 0.57 7.78 38.19 0.30 0.87 16 19 O -0.38 -5.42 11.36 -35.23 -0.40 -5.82 16 20 C 0.06 0.86 7.34 37.88 0.28 1.14 16 21 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 22 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.39 6.85 8.53 -40.82 -0.35 6.50 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.40 7.47 -51.93 -0.39 1.01 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.12 7.81 -51.93 -0.41 0.71 16 31 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -30.61 262.06 -5.57 -36.18 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.35 Total: 4.15 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.19 Total: -1.96 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.35 Total: -39.02 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.31 Total: -18.81 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.61 -5.57 -36.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.999 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds