Wall clock time and date at job start Sun Mar 29 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46944 * 240.00418 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.08999 * 110.74726 * 62.01653 * 15 13 12 17 17 C 1.55303 * 110.84936 * 185.71748 * 15 13 12 18 18 C 1.54950 * 100.94049 * 152.32581 * 17 15 13 19 19 O 1.43652 * 105.13529 * 323.55239 * 18 17 15 20 20 C 1.43237 * 109.96676 * 24.42999 * 19 18 17 21 21 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.08999 * 111.12360 * 270.23954 * 17 15 13 27 27 H 1.08991 * 111.12664 * 34.40457 * 17 15 13 28 28 H 1.08999 * 110.30579 * 204.64145 * 18 17 15 29 29 H 1.08994 * 110.39726 * 82.51095 * 18 17 15 30 30 H 1.09004 * 109.82835 * 238.76812 * 20 19 18 31 31 H 1.09008 * 109.90249 * 117.84854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 1 3.6733 -1.0960 3.4258 17 6 2.5959 0.2052 4.8261 18 6 2.4374 -0.8337 5.9648 19 8 1.6049 -1.8677 5.4159 20 6 1.7122 -1.8753 3.9875 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 3.5189 0.7740 4.9390 27 1 1.7320 0.8678 4.7758 28 1 1.9538 -0.3773 6.8285 29 1 3.4089 -1.2397 6.2465 30 1 0.7299 -1.7177 3.5422 31 1 2.1219 -2.8278 3.6512 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:37 Heat of formation + Delta-G solvation = -117.584810 kcal Electronic energy + Delta-G solvation = -14427.547055 eV Core-core repulsion = 11900.583513 eV Total energy + Delta-G solvation = -2526.963542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24879 -39.43661 -36.75363 -34.39932 -33.29964 -31.18174 -29.82742 -27.36010 -24.73113 -23.40393 -22.31569 -20.99809 -19.06016 -17.97120 -17.49862 -17.16907 -16.61559 -15.94811 -15.56227 -15.41929 -14.65099 -14.37987 -14.23781 -13.83955 -13.24933 -13.02654 -12.86016 -12.72034 -12.42999 -12.32073 -12.27065 -12.10288 -11.91208 -11.11585 -10.83775 -10.62651 -10.44081 -9.79859 -8.19068 -6.36893 1.44404 1.45358 1.57484 1.71692 2.31912 2.53134 2.93483 3.11637 3.33091 3.85994 3.93445 4.14751 4.27644 4.32624 4.70324 4.73106 4.79738 4.87098 4.89690 4.94516 5.07189 5.16975 5.41079 5.58836 5.66010 5.87431 5.94994 6.07715 6.71312 6.90990 7.30458 7.50416 8.87649 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060045 B = 0.006815 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.206683 B = 4107.856061 C = 4256.167222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.702 5.702 13 C 0.507 3.493 14 O -0.598 6.598 15 C -0.139 4.139 16 H 0.139 0.861 17 C -0.136 4.136 18 C 0.053 3.947 19 O -0.401 6.401 20 C 0.067 3.933 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.010 0.990 24 H 0.265 0.735 25 H 0.406 0.594 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -7.021 11.727 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.480 6.480 15 C -0.160 4.160 16 H 0.157 0.843 17 C -0.174 4.174 18 C -0.022 4.022 19 O -0.321 6.321 20 C -0.010 4.010 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.029 0.971 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.210 -6.229 11.725 13.928 hybrid contribution 0.182 -0.050 -1.254 1.268 sum 4.392 -6.279 10.471 12.975 Atomic orbital electron populations 1.21904 0.98365 0.99533 0.99495 1.18370 0.91112 0.91976 0.82079 0.98381 1.21583 1.32552 1.13576 0.90711 0.90645 1.25832 0.94849 0.95578 1.02449 1.70063 1.37079 1.24010 1.24605 0.85261 0.78075 0.78510 0.78265 1.18222 1.20465 1.21003 1.46304 1.64794 1.14194 1.09739 1.20928 0.77433 0.86947 0.85314 1.90638 1.53128 1.18432 1.85779 1.22962 1.02927 0.97307 0.92817 0.84348 1.23146 1.04232 0.97953 0.92112 1.23587 0.95997 0.86535 0.96106 1.88367 1.68477 1.55959 1.19263 1.23068 0.98489 0.98012 0.81402 0.91492 0.93937 0.97105 0.92532 0.75850 0.88036 0.91779 0.88240 0.89376 0.92562 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.27 13.88 2.56 44.24 0.11 14.00 16 3 H 0.00 -0.11 7.57 -2.39 -0.02 -0.12 16 4 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.51 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.70 -28.53 5.01 -446.09 -2.24 -30.77 16 13 C 0.51 19.83 6.99 87.66 0.61 20.44 16 14 O -0.60 -29.24 15.42 -3.04 -0.05 -29.29 16 15 C -0.14 -3.69 3.39 -10.28 -0.03 -3.73 16 16 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 17 C -0.14 -3.36 6.23 32.05 0.20 -3.16 16 18 C 0.05 1.05 7.78 72.65 0.57 1.61 16 19 O -0.40 -10.20 11.36 -148.98 -1.69 -11.89 16 20 C 0.07 1.65 7.34 72.45 0.53 2.19 16 21 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 22 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.27 14.37 8.31 -92.71 -0.77 13.59 16 25 H 0.41 13.61 8.53 -92.71 -0.79 12.81 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.95 7.47 -2.39 -0.02 1.93 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.60 7.81 -2.39 -0.02 1.58 16 31 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -67.49 262.06 1.95 -65.54 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.33 Total: 17.40 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 3.33 Total: -2.11 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.99 Total: -83.28 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.74 Total: -41.18 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -67.49 1.95 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.045 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds