Wall clock time and date at job start Sun Mar 29 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37101 * 119.99688 * 2 1 4 4 H 1.08004 * 119.99958 * 201.37578 * 3 2 1 5 5 C 1.38942 * 120.00491 * 21.37017 * 3 2 1 6 6 N 1.31420 * 119.99733 * 12.29369 * 5 3 2 7 7 Si 1.86798 * 120.00570 * 192.28765 * 5 3 2 8 8 H 1.48504 * 109.46777 * 85.05384 * 7 5 3 9 9 H 1.48498 * 109.47518 * 205.05109 * 7 5 3 10 10 H 1.48498 * 109.46928 * 325.05865 * 7 5 3 11 11 C 1.34777 * 120.00229 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99815 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99901 * 359.97438 * 11 2 1 14 14 H 1.09003 * 109.47769 * 54.99998 * 13 11 2 15 15 C 1.53094 * 109.48832 * 294.96980 * 13 11 2 16 16 C 1.53177 * 109.16254 * 182.40437 * 15 13 11 17 17 C 1.53177 * 109.03867 * 56.97823 * 16 15 13 18 18 C 1.53097 * 109.16414 * 303.02188 * 17 16 15 19 19 O 1.42898 * 109.48111 * 175.02245 * 13 11 2 20 20 H 1.09000 * 109.47244 * 272.95862 * 1 2 3 21 21 H 1.08992 * 109.47616 * 32.95904 * 1 2 3 22 22 H 1.09000 * 109.47086 * 152.96020 * 1 2 3 23 23 H 0.96996 * 120.00253 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.52430 * 302.30874 * 15 13 11 25 25 H 1.09000 * 109.52194 * 62.49950 * 15 13 11 26 26 H 1.09003 * 109.53951 * 297.11343 * 16 15 13 27 27 H 1.08996 * 109.61566 * 176.89162 * 16 15 13 28 28 H 1.08998 * 109.52192 * 183.11337 * 17 16 15 29 29 H 1.09000 * 109.56923 * 62.95685 * 17 16 15 30 30 H 1.08993 * 109.47910 * 297.62277 * 18 17 16 31 31 H 1.08996 * 109.47756 * 177.58553 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1747 1.2196 -0.3409 5 6 1.5274 2.3493 0.4384 6 7 0.3792 2.2795 1.0741 7 14 2.3216 4.0106 0.1246 8 1 1.9458 4.4910 -1.2294 9 1 1.8522 4.9841 1.1431 10 1 3.7981 3.8775 0.2104 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.6929 -2.4922 -0.8421 15 6 0.6029 -2.6103 1.3081 16 6 -0.1116 -3.9651 1.3262 17 6 0.9247 -5.0790 1.1482 18 6 1.6948 -4.8456 -0.1542 19 8 2.3094 -3.5560 -0.1180 20 1 -0.3634 0.0530 1.0263 21 1 -0.3634 0.8622 -0.5590 22 1 -0.3633 -0.9153 -0.4672 23 1 -0.0556 3.0906 1.3805 24 1 1.2904 -2.5498 2.1517 25 1 -0.1330 -1.8093 1.3786 26 1 -0.8350 -4.0066 0.5119 27 1 -0.6264 -4.0946 2.2782 28 1 0.4188 -6.0435 1.1045 29 1 1.6188 -5.0694 1.9885 30 1 1.0063 -4.8966 -0.9976 31 1 2.4626 -5.6113 -0.2646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050963405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:48 Heat of formation + Delta-G solvation = -77.551166 kcal Electronic energy + Delta-G solvation = -14915.262230 eV Core-core repulsion = 12390.034677 eV Total energy + Delta-G solvation = -2525.227553 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49912 -37.54227 -34.67317 -33.28644 -31.86785 -30.59950 -26.45981 -25.52431 -23.99550 -23.23943 -20.16690 -19.15099 -16.91568 -16.39304 -15.61219 -15.27591 -14.61848 -14.57085 -13.92723 -13.80368 -13.50892 -12.95579 -12.36182 -12.29203 -11.61430 -11.39589 -11.22034 -11.07611 -10.98076 -10.81757 -10.58731 -10.34193 -10.24577 -10.07389 -9.09382 -9.00014 -8.21504 -7.67643 -6.29428 -3.85202 3.18775 3.26602 3.31975 3.87061 3.90220 4.28194 4.92130 5.00999 5.07494 5.12488 5.21068 5.37473 5.46979 5.61824 5.76003 5.84665 5.92241 6.04954 6.14201 6.21358 6.29854 6.36665 6.59089 6.86511 7.21466 7.55739 7.59155 8.16197 8.52468 9.21761 9.43194 10.00928 10.74289 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059631 B = 0.008524 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.440509 B = 3284.049589 C = 3604.446078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.446 5.446 3 C -0.304 4.304 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.454 3.546 12 O -0.570 6.570 13 C 0.085 3.915 14 H 0.066 0.934 15 C -0.151 4.151 16 C -0.119 4.119 17 C -0.157 4.157 18 C 0.058 3.942 19 O -0.354 6.354 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.025 0.975 23 H 0.267 0.733 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -9.441 -0.573 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.166 5.166 3 C -0.432 4.432 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.755 3.245 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.241 3.759 12 O -0.453 6.453 13 C 0.023 3.977 14 H 0.083 0.917 15 C -0.189 4.189 16 C -0.157 4.157 17 C -0.194 4.194 18 C -0.019 4.019 19 O -0.272 6.272 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.615 -9.253 -0.499 10.352 hybrid contribution -0.254 0.773 0.001 0.814 sum -4.870 -8.480 -0.498 9.791 Atomic orbital electron populations 1.21629 0.81238 0.98632 1.01791 1.43484 1.05436 1.04337 1.63376 1.19679 0.99074 0.83380 1.41019 0.88258 1.25323 0.96563 1.00002 0.95441 1.69997 1.17177 1.29125 1.36204 0.85906 0.79626 0.81019 0.77947 1.20324 1.20971 1.19398 1.19616 0.88013 0.84029 0.84241 1.90529 1.13754 1.86691 1.54346 1.21859 0.90906 0.87828 0.97081 0.91654 1.22252 1.00315 0.97988 0.98300 1.21590 0.97517 0.94617 1.01976 1.22206 0.98919 0.98740 0.99580 1.22567 0.97269 0.86169 0.95915 1.88076 1.32132 1.12853 1.94151 0.92007 0.91231 0.95609 0.92277 0.90841 0.89316 0.91957 0.91520 0.91357 0.91077 0.93647 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 7.16 59.84 0.43 2.90 16 2 N -0.45 -11.75 3.02 -122.20 -0.37 -12.12 16 3 C -0.30 -8.67 9.31 -14.93 -0.14 -8.81 16 4 H 0.10 2.98 7.39 -52.48 -0.39 2.59 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.70 16 6 N -0.89 -23.59 10.59 55.50 0.59 -23.00 16 7 Si 0.93 21.01 29.57 -169.99 -5.03 15.98 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 11.85 7.05 -10.99 -0.08 11.77 16 12 O -0.57 -17.25 16.19 -14.31 -0.23 -17.49 16 13 C 0.08 1.72 2.24 -27.83 -0.06 1.66 16 14 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 15 C -0.15 -2.63 5.10 -26.59 -0.14 -2.76 16 16 C -0.12 -1.58 6.03 -26.55 -0.16 -1.74 16 17 C -0.16 -1.97 6.14 -26.59 -0.16 -2.13 16 18 C 0.06 0.84 6.84 37.21 0.25 1.09 16 19 O -0.35 -7.23 9.94 -55.08 -0.55 -7.78 16 20 H 0.06 1.41 6.63 -51.93 -0.34 1.07 16 21 H 0.07 1.63 7.06 -51.93 -0.37 1.26 16 22 H 0.03 0.48 5.84 -51.93 -0.30 0.17 16 23 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.09 1.55 5.23 -51.93 -0.27 1.28 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 250.20 15.07 3.77 3.77 Total: -1.00 -32.36 250.20 -6.10 -38.46 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.14 Total: -0.51 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.14 Total: 2.68 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.22 Total: -35.12 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.78 Total: -25.27 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.36 -6.10 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050963405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.090 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds